PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29686.m000871
Common NameLOC8276313, RCOM_0621430
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 289aa    MW: 31096.5 Da    PI: 9.5913
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29686.m000871genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017103125123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C+ C++ Fs++  L  H++ H
  29686.m000871 103 FSCNFCKREFSTSQALGGHQNAH 125
                    89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-6100130No hitNo description
Gene3DG3DSA:3.30.160.605.9E-4101129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.531103130IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MESIRVEPCL SDASSISAAS EGATAPKVGS DHGKSVIDLR MKRETAPTAY EPNSRTLLDL  60
KLSSEGSVRG SRLDLNLFNP ASGGSSHEDQ TVAEKQPERT RVFSCNFCKR EFSTSQALGG  120
HQNAHKQERQ LAKRRHGMDL GAFGHYPYYP YSSLSPHPFY GSISRSLGVR MESLIQKPSS  180
FPWMSSSAGA GAAFRYSHGG WSRQQAMMNS QSSIDRLRAE SLNTINGGGL GTSPRFDENR  240
NNTLPNVGAS SSSNNLGIIK SSAGDNLRPA GRATGDQVDA LGIDLSLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap29686.m000871
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525555.20.0zinc finger protein GIS, partial
TrEMBLB9SHT60.0B9SHT6_RICCO; Uncharacterized protein
STRINGXP_002525555.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.13e-17C2H2 family protein