PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29681.m001358
Common NameLOC8286464, RCOM_0612590
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 702aa    MW: 76102.2 Da    PI: 6.2119
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29681.m001358genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06277297526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C+ f++ G C+ Gd C +aHg
  29681.m001358 277 PCPEFRK-GSCRQGDACEYAHG 297
                    8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484038.55E-1532148IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.0E-1536148IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.61873143IPR020683Ankyrin repeat-containing domain
PfamPF127964.4E-873140IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001873103IPR002110Ankyrin repeat
CDDcd002042.85E-1075148No hitNo description
PROSITE profilePS5008811.461108143IPR002110Ankyrin repeat
SMARTSM002480.0025108140IPR002110Ankyrin repeat
SMARTSM003561.0E-4272298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.662277299IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.118307331IPR000571Zinc finger, CCCH-type
SMARTSM0035652307330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MCSGSKRKPT HLGFIDELQK EDYFCYDLSI LLELSASNDL IGFKRAIEEE GRDVDEPGLW  60
YGRRIGSRKM GIEERTPLMI AALFGSKDVL NYILETGRAD VNRGLGSDGA TALHCAAAGG  120
SAASLEVVKR LLDASADPSA VDANGNHAGD LIAPVVSSGL TSRRKALEIM LKGGSSGDEF  180
CVLADQNPFE MYGQELQEVS TPRVSKDGTE KKEYPVDLTL PDIKNGIYGT DEFRMYTFKV  240
KPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FRKGSCRQGD ACEYAHGIFE  300
CWLHPAQYRT RLCKDEINCT RRVCFFAHKP EELRPLYAST GSAVPSPRSY SANGSTLDMG  360
SISPLALGSP SVLIPPTSTP PMTPTGSSSP MGGWSNQSNI VPPTLQLPGS RLKSALSVRD  420
MELEMELLGL DSHRRRQQLM DELSGLSSPS SWNNGLSTSS AFAASSSDRT GELHRLGGVK  480
PTNLEDIFGS LDPSILPQLQ GLSVDATSSQ LQSPTGIQIR QNINQQLRSS YPTNFSSSPV  540
RPSSFGIDPS GAAAAAVLTS RSAAFAKRSQ SFVERSAVNR HTGFSSPTSS ATIMASNFSD  600
WGSPDGKLDW GIQGEELNKL RKSASFGIRN NGGAGAAATS LPATLNAPDV SWVQSLVKDA  660
PSTSPRQLGF EEQQQCHLNT GNSEIFPAWV EQLYIEQEQM VA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29681.m001358
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525655.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLB9SI360.0B9SI36_RICCO; Transcription factor, putative
STRINGXP_002525655.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein