PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29681.m001315
Common NameLOC8276379, RCOM_0611570
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 472aa    MW: 52548 Da    PI: 6.5135
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29681.m001315genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-17138184148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
    29681.m001315 138 KGQWTEEEDRKLIRLVKQFGVRKWAQIAEKLA-GRAGKQCRERWHNHL 184
                      799*****************************.*************97 PP
2Myb_DNA-binding54.72.4e-17190232145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +W++eE+ +lv+a+ + G++ W+ Ia+ ++ gRt++ +k++w+
    29681.m001315 190 KESWSEEEERILVEAHSKVGNR-WAEIAKLIP-GRTENAIKNHWN 232
                      578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.471133188IPR017930Myb domain
SuperFamilySSF466891.33E-30136231IPR009057Homeodomain-like
SMARTSM007172.7E-17137186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-28139191IPR009057Homeodomain-like
PfamPF139211.7E-19141199No hitNo description
CDDcd001671.25E-16141184No hitNo description
PROSITE profilePS5129421.564189239IPR017930Myb domain
SMARTSM007174.3E-17189237IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-21192237IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MEGGGGGGGG YSLGNLQNNP SICGPAPPPL TAVDRFLWGR SHSSTQSNVK NKETLVSTNG  60
LYEFSSSSGA IATGVSSWPC FQEINFVDGL FADGDNHSYW AYDTNPNVGY EEEVKVSGKS  120
SKGIGKKAKK GPCPTLIKGQ WTEEEDRKLI RLVKQFGVRK WAQIAEKLAG RAGKQCRERW  180
HNHLRPDIKK ESWSEEEERI LVEAHSKVGN RWAEIAKLIP GRTENAIKNH WNATKRRQNS  240
RRKHKQTENQ IGKPQSSILQ DYIKSKNLKT SSTGTTAITI TPSQSTTTTI NTPSSSTTSE  300
DPSSQFSYFL PDLSEPTVDD SLTCDDELLF LQNFFTDSTI KNPKNPEEKE TNSYNVVDHH  360
HYLKSSIMDP QQFTDASDQC DFFSSNSIPK ICPTDPQEEE KPTSHLYSDL YLSYLLNGAT  420
TSLSNSMDYG YDNNMNLESV MNQTCSNGKK EMDLIEMVSS SHFSQGSNRS NS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-471362382104C-Myb DNA-Binding Domain
1msf_C2e-471362382104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29681.m001315
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525613.10.0transcription factor MYB64 isoform X1
TrEMBLB9SHZ40.0B9SHZ4_RICCO; Myb119, putative
STRINGXP_002525613.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.17e-67myb domain protein 119