PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29681.m001312
Common NameLOC8276376, RCOM_0611540
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 448aa    MW: 49772 Da    PI: 8.1165
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29681.m001312genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027207230123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    ++C+ Cg+ F  + +L++H+   H
  29681.m001312 207 FPCTACGEIFQKPQLLEQHQAIkH 230
                    89******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.681207235IPR007087Zinc finger, C2H2
PROSITE patternPS000280209230IPR007087Zinc finger, C2H2
SuperFamilySSF563992.78E-13232447No hitNo description
Gene3DG3DSA:3.90.228.106.0E-6380447IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MPPPYVSFLL HSFLSLCYSP FLSSSSIILS TYHFSLSLFL EQCLIGEAEA ELKLLQQQMA  60
TGIVSVFNKF FSICVLLLHL GCFTFTAKDQ HQPPTRKRKA SPPPSSSSSS SPSRLRVSHK  120
ALSSSWSYLK RIFSSKAHKP ISQAQSPAPT LASARSSQHS IVTVAVPQED HQVSDITPPR  180
KKPSGSCQES DISTSNDQFF PLRNDIFPCT ACGEIFQKPQ LLEQHQAIKH AVSELVDGDS  240
GKNIVHIIFK TGWSCKDKNP EIHRILKIHN SPKILSRFEE YRELVKAKAA RNSSTIKRRD  300
ERCIADGNEL LRFYCSTFMC DLGVNGNSSI CSQQYCSVCG IIKSGFSPKL DGISTLSSSW  360
RAHVAVPEDI EEEFRFMNVK RAMLVCRVVA GRVGCEMEVE EEVNKEDGGF DSVVGRGGSG  420
VHTRLDEEEL LVFNPRAVLP CFVIVYSV
Cis-element ? help Back to Top
SourceLink
PlantRegMap29681.m001312
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525610.10.0uncharacterized protein LOC8276376
TrEMBLB9SHZ10.0B9SHZ1_RICCO; Uncharacterized protein
STRINGXP_002525610.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-115C2H2 family protein