PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29681.m001296
Common NameLOC8286480, RCOM_0611390
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 307aa    MW: 34516.5 Da    PI: 9.78
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29681.m001296genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.6e-082873346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+ E + + +a + + ++   +W+++a++++ g+t  +++  ++ 
    29681.m001296 28 KWTPAENKMFENALAVYDKDtpdRWHKVAAMIP-GKTVGDVIKQYRE 73
                     8********************************.******9999986 PP
2Myb_DNA-binding48.22.5e-15135179347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
    29681.m001296 135 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 179
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-42273IPR009057Homeodomain-like
PROSITE profilePS5129310.0332479IPR017884SANT domain
SMARTSM007178.6E-92577IPR001005SANT/Myb domain
SuperFamilySSF466895.87E-112780IPR009057Homeodomain-like
CDDcd001671.44E-72874No hitNo description
PfamPF002491.5E-62873IPR001005SANT/Myb domain
PROSITE profilePS5129420.955128184IPR017930Myb domain
SuperFamilySSF466895.46E-17130183IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-18131183IPR006447Myb domain, plants
SMARTSM007172.7E-13132182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-13132179IPR009057Homeodomain-like
CDDcd001672.23E-11135180No hitNo description
PfamPF002495.4E-13135179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MKWDIGVLSP TSYLSSTNWL IEESKNTKWT PAENKMFENA LAVYDKDTPD RWHKVAAMIP  60
GKTVGDVIKQ YRELEVDVNN IEAGLVPIPG YNTSAFTLDW VNSNSYDGFK PSYAFGGKRS  120
SSGRPADQER KKGVPWTEEE HKLFLMGLKK YGKGDWRNIS RNFVVTRTPT QVASHAQKYF  180
IRQLSGGKDK RRASIHDITT VNLNEIRTPS PENKRQASPD QSSVFSQQSN GVSLPRTHFQ  240
WNQPNSGAIM AFNSTNGNMF TSSTYGVNSY GMKLQGYNLH SGSLHESYIG PQTIAFQMQS  300
AQHYPDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1629941176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29681.m001296
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525595.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-141DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLB9SHX60.0B9SHX6_RICCO; DNA binding protein, putative
STRINGXP_002525595.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-109Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]