PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29680.m001715
Common NameRCOM_0609810
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ZF-HD
Protein Properties Length: 160aa    MW: 18049.1 Da    PI: 7.9515
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29680.m001715genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer94.31e-292276358
    ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                   +++YkeC +NhA+ +Gg+a DGCgEf+p+ g +gt +al C AC+CHRnFHR+e  
  29680.m001715 22 TIQYKECWRNHAVLIGGYAADGCGEFIPK-GGQGTRDALLCEACDCHRNFHRKELI 76
                   789*************************9.8889*******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-162075IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.0E-282374IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.8E-262474IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.1152574IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MANTDSNSSS KTFNQESEER TTIQYKECWR NHAVLIGGYA ADGCGEFIPK GGQGTRDALL  60
CEACDCHRNF HRKELIKNGI ALLGSHHIPT PLGWRKRDVH GSYPFPSALS QPSFSPGHHH  120
YHYSQKKMQD MVSDEESVFY SGSQGEMEMK ASKRTKRETL
Cis-element ? help Back to Top
SourceLink
PlantRegMap29680.m001715
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576566.12e-91zinc-finger homeodomain protein 5
TrEMBLB9S7M81e-118B9S7M8_RICCO; Transcription factor, putative
STRINGXP_002521997.11e-119(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1711168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.13e-22homeobox protein 21