PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

TALE

Protein Properties

Length: 562aa MW: 60532 Da PI: 8.4805

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29676.m001705	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.4	1.8e-06	316	340	30	54
HHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 30 reeLAkklgLterqVkvWFqNrRak 54 + LA+++gL+ +qV++WF N R + 29676.m001705 316 KHLLARQTGLSRNQVSNWFINARVR 340 5679*******************88 PP
2	BELL	122.1	2.3e-39	166	237	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+l+eVd+rY++y+eq+q+v++sF+ v+g g+a pYtslA+ka+SrhFrcLkdai q+ 29676.m001705 166 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTSLAQKAMSRHFRCLKDAIGAQL 237 589*****************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	7.2E-82	88	235	IPR006563	POX domain
Pfam	PF07526	1.8E-52	93	233	IPR006563	POX domain
PROSITE profile	PS50071	10.203	284	344	IPR001356	Homeobox domain
CDD	cd00086	1.05E-9	287	345	No hit	No description
SMART	SM00389	4.3E-6	287	348	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.97E-12	288	352	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-22	290	350	IPR009057	Homeodomain-like
Pfam	PF05920	4.8E-11	304	340	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
IASIVEGQGL SLSLSSSLQH LEAVKAEELR MGEGGLLYYN HQTGGSGSSS APYYKNLSGQ 60 HQAALHLQPG GVGVGQNHQV HVGYGSSLGV VNVLRNSKYI KAAQELLEEF CSVGRGQFKK 120 NKFSRQSTNP SSNNPGGNSS GGGSGGGGGG GSSSSTKDFP PLSASDRIEH QRRKVKLLSM 180 LDEVDRRYNH YCEQMQMVVN SFDLVMGFGA AVPYTSLAQK AMSRHFRCLK DAIGAQLKHS 240 CELLGEKDGA GTSGITKGET PRLRLLEQSL RQQRAFHQMG MMEQEAWRPQ RGLPERSVNI 300 LRAWLFEHFL HPDADKHLLA RQTGLSRNQV SNWFINARVR LWKPMVEEMY QQESKDEDGE 360 DRGHQSKQNS SSNNNNNNNN TSGQLAQTST PTTTNTNTST TPTASSSPTI TTPKSNTPTP 420 ASAASKRSDI GNENDPSHLL AMNRQCFSEN QATNTTSTTI ITPTINTTTT EMVAPPLASP 480 HGHQPFHDLA DDICRRGSIV TGDYGTTGSA AGADHIGSTL IRFGTTTAAA GDVSLTLGLR 540 HAGNMPEKNT ASAFSVRDFG NC

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

IASIVEGQGL SLSLSSSLQH LEAVKAEELR MGEGGLLYYN HQTGGSGSSS APYYKNLSGQ  60
HQAALHLQPG GVGVGQNHQV HVGYGSSLGV VNVLRNSKYI KAAQELLEEF CSVGRGQFKK  120
NKFSRQSTNP SSNNPGGNSS GGGSGGGGGG GSSSSTKDFP PLSASDRIEH QRRKVKLLSM  180
LDEVDRRYNH YCEQMQMVVN SFDLVMGFGA AVPYTSLAQK AMSRHFRCLK DAIGAQLKHS  240
CELLGEKDGA GTSGITKGET PRLRLLEQSL RQQRAFHQMG MMEQEAWRPQ RGLPERSVNI  300
LRAWLFEHFL HPDADKHLLA RQTGLSRNQV SNWFINARVR LWKPMVEEMY QQESKDEDGE  360
DRGHQSKQNS SSNNNNNNNN TSGQLAQTST PTTTNTNTST TPTASSSPTI TTPKSNTPTP  420
ASAASKRSDI GNENDPSHLL AMNRQCFSEN QATNTTSTTI ITPTINTTTT EMVAPPLASP  480
HGHQPFHDLA DDICRRGSIV TGDYGTTGSA AGADHIGSTL IRFGTTTAAA GDVSLTLGLR  540
HAGNMPEKNT ASAFSVRDFG NC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	151	SGGGSGGGGGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29676.m001705

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015576757.1	0.0	BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-144	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	B9S8S7	0.0	B9S8S7_RICCO; Bel1 homeotic protein, putative (Fragment)
STRING	XP_002522396.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3524	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-132	BEL1-like homeodomain 2

Link Out ? help Back to Top
Phytozome	29676.m001705

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]