PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29676.m001676
Common NameRCOM_0603560
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 291aa    MW: 32467.8 Da    PI: 10.4819
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29676.m001676genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66.2e-152172892099
                    HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3  20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                    +k +++h++   ++k +tl+  +gr+W+ +++   ++    +++GWk+Fv+ n L+egD++vF+l++++++  +v++fr+
  29676.m001676 217 NKLCKKHMQH--QNKNITLQ-FEGRTWSATFCSLTNR----IRGGWKSFVRNNSLREGDVCVFELIDSRKALVKVSIFRS 289
                    4667788655..44456644.589*******444444....99***********************98777789999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.9E-6155290IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-15214289IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-12217289IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-13219288IPR015300DNA-binding pseudobarrel domain
CDDcd100177.09E-14220288No hitNo description
PROSITE profilePS5086311.871236290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MIETSDANSA YSTQRGKSPL PCSQPRKKMR SDETGNTVAT SNSETLSSKR KVNLNSYSPE  60
FKVRRVAAPS ANSSFSDRSL PLINPIYLAN GYLNLNQVIG RINVAMPRSN LSKCKDKQLS  120
HERKAAGGQP SEGPPCLRIV SAAESANNFV SKHPFFRVVM RSTYLNDYVI VFRYIDSSKA  180
KLEQKQGSSG TAHLQSSMMG STSYAYCNSG HHYASTNKLC KKHMQHQNKN ITLQFEGRTW  240
SATFCSLTNR IRGGWKSFVR NNSLREGDVC VFELIDSRKA LVKVSIFRSE N
Cis-element ? help Back to Top
SourceLink
PlantRegMap29676.m001676
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576732.23e-76LOW QUALITY PROTEIN: B3 domain-containing protein REM17-like
TrEMBLB9S8P80.0B9S8P8_RICCO; Uncharacterized protein
STRINGXP_002522367.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-10B3 family protein