PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29676.m001648
Common NameLOC8267256, RCOM_0602390
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Dof
Protein Properties Length: 335aa    MW: 35625.4 Da    PI: 8.5614
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29676.m001648genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.14.5e-3966124361
         zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                    +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++
  29676.m001648  66 SENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNT 124
                    57899***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.2E-3268123IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-2469120IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.54469123IPR003851Zinc finger, Dof-type
PROSITE patternPS01361071107IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MIQELLGGAG LIGGETKISI AGTILEGTPS HSPSLSPSSS TTTTSATAAT ATATTTTANS  60
TTSSTSENLR CPRCDSSNTK FCYYNNYNLT QPRHFCKTCR RYWTKGGALR NVPIGGGCRK  120
NKNTVVSASV AKSSNNKMKT MVSEIGRSSF GNVFDHELPS SSPIMWASPH NSHLLTLLRA  180
NHNPNPNSTT LSNSLGVKEE TGCMIGTQMM AETTGATGAL NARTLGMDHL SQVPSLGLCS  240
PFWKNSQNQA QHHQQNGFIV GEAQNSGIQE LYQRLRSSTN TYYTDNSSVV LSNVGSSSTS  300
SSNILESSPV AGGELGYWNP TFSWSDLPTT NGAYP
Cis-element ? help Back to Top
SourceLink
PlantRegMap29676.m001648
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025013724.10.0dof zinc finger protein DOF3.7
TrEMBLB9S8M10.0B9S8M1_RICCO; Zinc finger protein, putative
STRINGXP_002522340.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72193247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07640.12e-32Dof family protein