PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

MYB_related

Protein Properties

Length: 303aa MW: 32908 Da PI: 10.4987

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29661.m000926	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.5	2.3e-11	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G+g W+tI R+ ++k++w++ 29661.m000926 5 KQKWTAEEEAALKAGVLKHGTGKWRTILMDPEfsailRLRSNVDLKDKWRN 55 79*********************************99*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.428	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	6.21E-15	2	64	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-12	4	56	IPR009057	Homeodomain-like
SMART	SM00717	3.5E-6	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-7	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	1.07E-17	6	57	No hit	No description
SMART	SM00526	2.0E-12	117	182	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	22.582	119	187	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	1.2E-14	121	196	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.1E-13	123	190	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	1.9E-8	124	180	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0046686	Biological Process	response to cadmium ion
GO:0000786	Cellular Component	nucleosome
GO:0005730	Cellular Component	nucleolus
GO:0003691	Molecular Function	double-stranded telomeric DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043047	Molecular Function	single-stranded telomeric DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MGAPKQKWTA EEEAALKAGV LKHGTGKWRT ILMDPEFSAI LRLRSNVDLK DKWRNINVTA 60 IWGSRQKAKL ALKKSPQTPK RDENPKALSS VVQGNEEIVD AKPIAVSNGT PKNVGSKELL 120 ARLDNLILEA ITTLREPSGS DRPSIALYIE EKYWAPPNLM KLLAGKLKLL TASGKLIKVK 180 HKYRIAPSSA VSEGRRSSPL VRIEGKQKDS PKSEKSNTKI LTKSQVDQEL SKIKGMTAEE 240 AAAAAAKAVA EAEAAIAEAE AAARDADAAE AEAEAAQVFA KAAIKAFKYR TRHLVNTVLS 300 QVF

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00626	PBM	Transfer from PK06103.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29661.m000926

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002525279.2	0.0	telomere repeat-binding factor 2
Refseq	XP_015578546.1	0.0	telomere repeat-binding factor 2
Swissprot	Q9FJW5	2e-85	TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBL	B9SH10	0.0	B9SH10_RICCO; Histone H1.1, putative
STRING	XP_002525279.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1453	33	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67580.2	5e-74	MYB_related family protein

Link Out ? help Back to Top
Phytozome	29661.m000926

Publications ? help Back to Top
Lee WK,Cho MH Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana. Nucleic Acids Res., 2016. 44(10): p. 4610-24 [PMID:26857545] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]