PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29661.m000926
Common NameRCOM_0580970
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 303aa    MW: 32908 Da    PI: 10.4987
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29661.m000926genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.3e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G+g W+tI            R+  ++k++w++
    29661.m000926  5 KQKWTAEEEAALKAGVLKHGTGKWRTILMDPEfsailRLRSNVDLKDKWRN 55
                     79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.428161IPR017930Myb domain
SuperFamilySSF466896.21E-15264IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-12456IPR009057Homeodomain-like
SMARTSM007173.5E-6459IPR001005SANT/Myb domain
PfamPF002491.6E-7555IPR001005SANT/Myb domain
CDDcd116601.07E-17657No hitNo description
SMARTSM005262.0E-12117182IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150422.582119187IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.2E-14121196IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-13123190IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.9E-8124180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV LKHGTGKWRT ILMDPEFSAI LRLRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKKSPQTPK RDENPKALSS VVQGNEEIVD AKPIAVSNGT PKNVGSKELL  120
ARLDNLILEA ITTLREPSGS DRPSIALYIE EKYWAPPNLM KLLAGKLKLL TASGKLIKVK  180
HKYRIAPSSA VSEGRRSSPL VRIEGKQKDS PKSEKSNTKI LTKSQVDQEL SKIKGMTAEE  240
AAAAAAKAVA EAEAAIAEAE AAARDADAAE AEAEAAQVFA KAAIKAFKYR TRHLVNTVLS  300
QVF
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29661.m000926
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525279.20.0telomere repeat-binding factor 2
RefseqXP_015578546.10.0telomere repeat-binding factor 2
SwissprotQ9FJW52e-85TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLB9SH100.0B9SH10_RICCO; Histone H1.1, putative
STRINGXP_002525279.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.25e-74MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]