PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29661.m000902
Common NameLOC8283348, RCOM_0578520
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family LBD
Protein Properties Length: 246aa    MW: 26988.7 Da    PI: 8.6625
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29661.m000902genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.41.7e-312103197
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C+vlr++C++ C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q++
  29661.m000902   2 SCNGCRVLRKGCSETCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPETQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAA 97 
                    6*********************************************************************************************** PP

         DUF260  92 aelall 97 
                    +e++l+
  29661.m000902  98 VETVLR 103
                    998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.7031107IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPETQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PELLAGSSPS  120
PASDETSEAE VTCTDMWKLQ DPNPHSRFSN SRSKSSPKRK RINNNETLTI NKQQLPKPLY  180
LPSNDLDLRL TPSFSPKNSP RKPELRRPGT PSMNSEESVT TTCFDSGFGD QYGNGGGDRK  240
LLNLFV
Cis-element ? help Back to Top
SourceLink
PlantRegMap29661.m000902
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525255.10.0LOB domain-containing protein 37
SwissprotQ9SN231e-92LBD38_ARATH; LOB domain-containing protein 38
TrEMBLB9SGY60.0B9SGY6_RICCO; LOB domain-containing protein, putative
STRINGXP_002525255.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.16e-88LOB domain-containing protein 38