PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29647.m002113
Common NameLOC8272068, RCOM_0558970
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 340aa    MW: 38451.1 Da    PI: 5.0976
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29647.m002113genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.6e-07213261255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    r+ +   +rrRR+ri +++  L+ellP++        s + +  + ++Y+k+Lq
  29647.m002113 213 RQRAISSDRRRRERIAERLKALQELLPHS-----VEGSQIVVMDEIIDYVKYLQ 261
                    55667789********************9.....68899*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.2E-10211273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.849211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-9212270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-5213261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-7217266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDGQNGYPNA LELMMMMNIG WNVNDVSYVP DEPEDDSNQH FITLDGGGQN PLPLPLLFGS  60
QRTPLNYYEF LTENSSKAPD RHVLESIPSP VGDSHFIQGT TEIQKELFYN SGMPSSSNPK  120
HAGPSLDMDS WKLSSYPYMF SMDNHESSLN VRYNEEDSRN QLENLQDQNQ AQSHIVWTQE  180
PPSEVVANVS QSQPRAKVSP SVFLSNPGSN PSRQRAISSD RRRRERIAER LKALQELLPH  240
SVEGSQIVVM DEIIDYVKYL QLQMKELSRS RLEGHLCSGP AHFLEGYHPY ILHQQTMNEP  300
LEETMAKLLK VNSSAATKFL ESKGLFVMPM ALADRLKQAI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219224DRRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMap29647.m002113
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520769.10.0transcription factor bHLH66 isoform X2
TrEMBLB9S4500.0B9S450_RICCO; DNA binding protein, putative
STRINGXP_002520769.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF121642426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.12e-14LJRHL1-like 2