PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29647.m002009 | ||||||||
Common Name | LOC8287166, RCOM_0555400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | C3H | ||||||||
Protein Properties | Length: 478aa MW: 50977.2 Da PI: 8.5864 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.4 | 1.8e-11 | 52 | 78 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ + C +++rtG+C yG+rC+++H++ 29647.m002009 52 PGVPDCVYYMRTGFCGYGNRCRYNHPR 78 57899********************96 PP | |||||||
2 | zf-CCCH | 37 | 5.6e-12 | 99 | 123 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+++tGtCk+G++CkF+H++ 29647.m002009 99 EPSCEFYLKTGTCKFGASCKFHHPK 123 577********************96 PP | |||||||
3 | zf-CCCH | 36.4 | 9e-12 | 144 | 169 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++++tG+Ck+G +CkF+H++ 29647.m002009 144 GENECSYYLKTGQCKFGITCKFHHPQ 169 6789********************97 PP | |||||||
4 | zf-CCCH | 36.5 | 8.3e-12 | 303 | 329 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H++ 29647.m002009 303 PGEPECQYYLRTGDCKFGSSCRYHHPR 329 5799*********************96 PP | |||||||
5 | zf-CCCH | 28.7 | 2.3e-09 | 354 | 375 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C f++r+G+Ck+G++CkF H++ 29647.m002009 354 CTFYLRNGHCKFGSTCKFDHPM 375 ********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 7.7E-7 | 51 | 78 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.314 | 51 | 79 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-8 | 53 | 78 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 56 | 79 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 57 | 78 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-5 | 96 | 123 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.267 | 96 | 124 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 99 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.2E-5 | 100 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-4 | 102 | 123 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-5 | 142 | 169 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.342 | 142 | 170 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-9 | 144 | 169 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 146 | 170 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-4 | 148 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.0E-6 | 302 | 329 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.817 | 302 | 330 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-9 | 304 | 329 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-6 | 306 | 331 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.3E-5 | 308 | 329 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-4 | 348 | 375 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.544 | 348 | 376 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 351 | 379 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 353 | 376 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-7 | 354 | 375 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MDLYGRSQAR NGLQSGQQPE WSSGGAETGL EESMWRLGLN NSGGGESYPE RPGVPDCVYY 60 MRTGFCGYGN RCRYNHPRNR AAVEAAVRAT GEYPERIGEP SCEFYLKTGT CKFGASCKFH 120 HPKHGGGSLS HVPLNTHGYP LRPGENECSY YLKTGQCKFG ITCKFHHPQP AGSSLPESAP 180 QFYQPVQSPS IPIPDQYGGA SASLRVRPPL LPGSYVQGAY GPVLFSPGVV PIPGWSPYSA 240 PVSPVLSPSA QPAVGATSLY GVTQLSSSTP ALAGPYPSPS SAAAAAAAPL SGTQKEQTFP 300 ERPGEPECQY YLRTGDCKFG SSCRYHHPRD RVVPRTNCVL SPLGLPLRPG AQHCTFYLRN 360 GHCKFGSTCK FDHPMETMRY SPSASSLIDM PVAPYPVGSL LATLAPSSSS SELIGGTKID 420 PYLSRIPSSG NTSSSGVGLM FSQTGSVPLS ELQLPSQNPV PLTSSRSTRQ GAEVRRSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29647.m002009 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002520668.1 | 0.0 | zinc finger CCCH domain-containing protein 32 isoform X1 | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | B9S3U9 | 0.0 | B9S3U9_RICCO; Nucleic acid binding protein, putative | ||||
STRING | XP_002520668.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | 29647.m002009 |
Entrez Gene | 8287166 |