PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29647.m001996
Common NameRCOM_0555270
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 631aa    MW: 69354.8 Da    PI: 8.7744
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29647.m001996genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05114136123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k F r  nL+ H r H
  29647.m001996 114 FVCEICNKGFQRDQNLQLHRRGH 136
                    89*******************88 PP
2zf-C2H215.26e-05190212123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k +  +s+ k H++t+
  29647.m001996 190 WKCDKCSKKYAVQSDWKAHQKTC 212
                    58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-5113136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.1E-8113136No hitNo description
SMARTSM003550.017114136IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949114136IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SMARTSM0035598155185IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.7E-5178211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.1E-8185211No hitNo description
SMARTSM0035594190210IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MSNITGGEGS FSSGNTGEEV QQLQEKQQQL QNHFHGSNLS GPNSGATNSN GSTSQQTAVK  60
KKRNLPGTPG NNNKTLETNE KGVLDCSKRY EFSRDPNADV IALSPTTLMA TNRFVCEICN  120
KGFQRDQNLQ LHRRGHNLPW KLRQRTTTEV KKRVYICPEP TCVHHNPARA LGDLTGIKKH  180
FSRKHGEKKW KCDKCSKKYA VQSDWKAHQK TCGTREYKCD CGTIFSRIYV PALVCNLALL  240
SISLLTLLFN DQSCRRDSFI THRAFCDALA EENNKVNQGL TGSHLQNQMP ELMSSMPLTT  300
NTNTSIGISD FNSFDPKNPL KSLPQELVPM PFKSMNMAGG MFSSSSGTLF GGPRSIASTS  360
SSLQLSSNSS SGYNYLQDGK NGCQISSSAQ MSATALLQKA AQMGATASNS INSPMMQKSF  420
ASSMACPDQI IPIRPQLPRP PSFGGVQQHN NTTSYDHFPS SQLLDQTHLV GINGGGYNQP  480
NGTLQKGQQE MSQFFDPTSS SGMSDMGMLS TMFMGTDQNP GFMKNIEHSN NDHQDSGNTT  540
SLIHGRAHSM ERTASGPSRL VGHNGESSDM MTRDFMGIGG SRPANLHEQQ QQQQQRMEMG  600
AMSQQRMPMM SHFQQQLSLG ESAMEKPIWE V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-28186277366Zinc finger protein JACKDAW
5b3h_F4e-28186277366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29647.m001996
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015575643.10.0protein indeterminate-domain 2
SwissprotQ9SCQ61e-101IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLB9S3T60.0B9S3T6_RICCO; Nucleic acid binding protein, putative
STRINGXP_002520655.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.13e-89indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]