PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29646.m001100
Common NameLOC8264223, RCOM_0553970
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TCP
Protein Properties Length: 409aa    MW: 45867.5 Da    PI: 6.6814
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29646.m001100genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.27.2e-3595197289
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssssasnsssg.... 88 
                    +g+kdrhsk++T++g+RdRRvRlsa++a+ f+d+qd+LG+d++sk+++WL+++ak ai++l ++     +   a++++++++  ++ +   +    
  29646.m001100  95 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIDFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLDELppwhpT---ANDTNEAMETDQNVE---Ptemp 184
                    79**************************************************************764431...333322222222211...12223 PP

            TCP  89 ............k 89 
                                +
  29646.m001100 185 igeqlessgytfQ 197
                    4333322233330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.1E-3095173IPR005333Transcription factor, TCP
PROSITE profilePS5136932.94897155IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MRNLDFQINQ QQQLQNPVYR ETQQQNLDIQ QPLHQQHRHL LQNNQEYGEA LNLSQAEVEP  60
SRQSLQFTKS RQRTGMKGAV GEIVQAQGGH ILRSTGRKDR HSKVCTAKGP RDRRVRLSAH  120
TAIDFYDVQD RLGYDRPSKA VDWLIKKAKS AIDKLDELPP WHPTANDTNE AMETDQNVEP  180
TEMPIGEQLE SSGYTFQPHK SNYSSFVSPT IDPDALNDTM KSLFPTSSAN SSMHFQSYPP  240
DIISRTINHT EDLGLSLHSF QNQSLIHGQS QAGTSHTPSD ELASAQVEYE PNLIGWSNNT  300
SARSRAGGAF SFNPLPIPLQ QAMFSQNSAL SQRGSLQSNF SQSMHTWNDL TMSSPDHHRT  360
QVIHQPFIFG SRFAPEALAG HSIPAQIHGQ EEQRFVSDMP SSASPNSQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-19102155154Putative transcription factor PCF6
5zkt_B1e-19102155154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29646.m001100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525138.10.0transcription factor TCP4
TrEMBLB9SGL90.0B9SGL9_RICCO; Transcription factor, putative
STRINGXP_002525138.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.12e-68TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3