PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29638.m000522
Common NameRCOM_0545200
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 473aa    MW: 53703.8 Da    PI: 9.5975
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29638.m000522genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.8e-09375423348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      rWT+ E  +lvd+v ++G g W+ I + +      Rt  ++k++w+++l
    29638.m000522 375 RWTPSEVMKLVDGVSKYGVGKWTHIKKLLFsssSYRTSVNLKDKWRNLL 423
                      9********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-13366426IPR009057Homeodomain-like
PROSITE profilePS5129416.776368427IPR017930Myb domain
SuperFamilySSF466891.64E-16370441IPR009057Homeodomain-like
SMARTSM007171.4E-10372425IPR001005SANT/Myb domain
PfamPF002491.5E-7375423IPR001005SANT/Myb domain
CDDcd116606.72E-19376424No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MLDSKSEDNN RMQGTDKKVP LGDFSLLSTC AEAAVTDSNL NCNAREDSCL ENVPLESHSS  60
CSQKGERDIE LVDASSRAMV FECPCDKNSL LLDKMTAQDL RQVFSGMFGR ETSVLDKQWL  120
KRHILFGLQN QGEIVNGLNL LDCGKTSKAD EGETVILSSK SSSRSAPDST DISDDQFIEK  180
NHVKREKFYG CNSLESASSP VREIKFASVD ETNIANILVT RKRTYRPTRI WTKGLQEQKS  240
RYHSRKWGAS TKNARKDSLL ARSHKQHHQK GIGVAHLVFQ KESLEGSCIP VPFDLRVQEG  300
QSMKNTSLVG FYLEVLNRKH YCVSFIAVIL LFRASVSTED LDMETSLADS EKDISQSDCA  360
TRIKKARKQR RRHRRWTPSE VMKLVDGVSK YGVGKWTHIK KLLFSSSSYR TSVNLKDKWR  420
NLLKASRNDM QKKRKIEHRE TQASYQLPES VWNQIRELAV IYSYPGESKS NVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1366374RKQRRRHRR
2368374QRRRHRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap29638.m000522
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025014930.10.0uncharacterized protein LOC8264869 isoform X2
TrEMBLB9STW40.0B9STW4_RICCO; Uncharacterized protein
STRINGXP_002529433.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150181313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.13e-26TRF-like 6