PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29638.m000519
Common NameLOC8264866, RCOM_0544970
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 353aa    MW: 38010.6 Da    PI: 8.891
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29638.m000519genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.31.7e-10146172127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    yk+elCr f  +G+C+y ++C+FaHg+
  29638.m000519 146 YKMELCRSFENFGHCRYASKCQFAHGK 172
                    9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.18E-8145176IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.023145173IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6145172IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-7146172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-14146177IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
METTLHSSKK IPKLQSLTGT VSPISATRLN TDSTLIRYLC SSGAGSPINA NDDAAAGLLS  60
PAITAKSSSG SNSFGRMSSS SFSPLSSIEN IMMISPSPSP SSFRRTPPMK VMDDDVLVMD  120
GILVESKGSR VSRYLISSDS GGGLSYKMEL CRSFENFGHC RYASKCQFAH GKEELRPTSS  180
NMKNKPEVHP SFKSPSSRSY AQALASRSSS SPPPNMTETG AQTDNIIDES QYPSLTTPAS  240
PSQPPRSGKQ RNLTGPKLPK DSLAPTLTNP EELSKKIITP TPSDQEISKK SPTIYTNYQQ  300
WSPLDDGIDI SLPGDTDTQS QSSKKDFEGH IDNVLYGPTT GKRLPAFSKF CPH
Cis-element ? help Back to Top
SourceLink
PlantRegMap29638.m000519
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529430.10.0mRNA decay activator protein ZFP36L1
TrEMBLB9STW10.0B9STW1_RICCO; Uncharacterized protein
STRINGXP_002529430.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117801416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.17e-07C3H family protein