PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29636.m000750
Common NameRCOM_0539820
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HSF
Protein Properties Length: 464aa    MW: 52555.8 Da    PI: 6.4177
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29636.m000750genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.19e-36471372101
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl k+ye+++d+++++++sws++g sfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+k++ ++         weF +++F +g+++ll++i
  29636.m000750  47 FLIKTYEMVDDPSTSSIVSWSHTGCSFVVWNPPEFAQDLLPKYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFGNEEFIRGQRHLLSNI 133
                    9****************************************************************999.........******************* PP

                    XXXX CS
   HSF_DNA-bind  98 krkk 101
                    +r+k
  29636.m000750 134 RRRK 137
                    **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3839130IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-6143136IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.89E-3643136IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-3147136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-204770IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-208597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-2098110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MTRLPCFPSG SFIGLQESGI RVCWHTQIIG MESSHGGSSS SNAPAPFLIK TYEMVDDPST  60
SSIVSWSHTG CSFVVWNPPE FAQDLLPKYF KHNNFSSFVR QLNTYGFRKI DPDQWEFGNE  120
EFIRGQRHLL SNIRRRKPIH SHSLQNQGNT SPLTDLEKRE YEEKIKRLKH DKSLLQMEVQ  180
RNEMEKQAFE CQIMSLGERL VSMERRQMQL VSCLAQLAKK PGFASALMQQ SDYHNKKRRL  240
LEFNHFSSEC NTEDNPGWRL AKENPDRSPA STLNFEIVDK LDSSIKCFEN FLLGVKETSA  300
QDMHDFRIVS PPSPVIFRQL SASSLDADTC SPRSLPSSPH SMDIPSSPEL AGCINPVDNL  360
KTSPPSFSDH DADFKPACAP VDEAVQESAV EATNPTAARP GVNDHFWEYY LTEAPGSTSI  420
QELKNNQSKQ ADANNRTGDR HWWNTDGIHD LTKHMEHLAP AERT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-263613619129Heat shock factor protein 1
5d5v_B7e-263613619129Heat shock factor protein 1
5d5v_D7e-263613619129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29636.m000750
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015578895.10.0heat stress transcription factor A-4a
TrEMBLB9SIR60.0B9SIR6_RICCO; Heat shock factor protein, putative
STRINGXP_002525885.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141001620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-84heat shock transcription factor A4A