PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29634.m002080
Common NameLOC8279139, RCOM_0534510
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 382aa    MW: 42583.5 Da    PI: 8.4228
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29634.m002080genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.7e-052853191554
                    HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +i++++++L++l+ +      +K + a++L+ ++ YI+ L
  29634.m002080 285 KIREKIATLQRLVAPY-----GKTDTASVLTDTIGYIQFL 319
                    89***********999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.594270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0014279325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-9283335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.51E-4284324No hitNo description
Gene3DG3DSA:4.10.280.101.3E-7284327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEPANLHHPQ HHLQEQLAGY YSSLLLQPDY YMFSNLNNMH PGFILDSWAT NRSSNICGQG  60
LMGFPQQSAN EFLLANIKEE MPDSFPKLSE VAYTSPCNIE ESHSLSTKTQ YPHELGDHNH  120
FLTSNGTSFS SGHRHHHIPE LQLSAGELPY INSGQNSASL ENSSSASNRY DFRHSTLQSL  180
KSSNSNSCFS LLSNSLDLNL QVLDLLNPTY GAASPNSHGH YFMGQLKDSP SSSSNKASII  240
EDGIDRKRRY NSSFPESKNF SVEAKKHKPA SQLSSPPSKV IKKEKIREKI ATLQRLVAPY  300
GKTDTASVLT DTIGYIQFLH DQVKTLSVPY MRPRQSKLTR TVKESLSKED GKGQPKRDLL  360
SRGLYLVPTP YASFIDSYNG GI
Cis-element ? help Back to Top
SourceLink
PlantRegMap29634.m002080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521525.10.0transcription factor bHLH110
TrEMBLB9S6A60.0B9S6A6_RICCO; Uncharacterized protein
STRINGXP_002521525.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.16e-20bHLH family protein