PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29633.m000891
Common NameRCOM_0530720
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 242aa    MW: 27285.7 Da    PI: 5.3871
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29633.m000891genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.6e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + +   G ++W+ +++  g+ R++k+c++rw +yl
    29633.m000891 14 RGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-21564IPR009057Homeodomain-like
PROSITE profilePS5129419.726965IPR017930Myb domain
SMARTSM007176.3E-61363IPR001005SANT/Myb domain
PfamPF002495.0E-111461IPR001005SANT/Myb domain
SuperFamilySSF466898.32E-201590IPR009057Homeodomain-like
CDDcd001673.74E-51661No hitNo description
Gene3DG3DSA:1.10.10.602.0E-76588IPR009057Homeodomain-like
SMARTSM007174666143IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRQPCCDKI GLKRGPWTIE EDHKLMNFIL NNGIHCWRMV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGGF TEMEENQIIQ LHSRLGNRLK QLGLDPLTHK PIGKIEKVLT DEPIPEESNS  120
SSVGQVDKAK NELMVRTEDK RETQESALDN NQALSSGSMD FGSWVDEIEK HVSSSSSLSV  180
EESNNPSIGE SPSVQDDCSL QQWLDSVDSI LPWDSFAHLG DDIFFPGNNS QCNKPNSFPK  240
YS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-14121275109B-MYB
1gv2_A5e-141293282MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29633.m000891
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579508.11e-164myb-related protein 315
TrEMBLB9SLR21e-178B9SLR2_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002526931.11e-179(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.15e-66myb domain protein 40