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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29631.m001046 | ||||||||
Common Name | RCOM_0529200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | YABBY | ||||||||
Protein Properties | Length: 244aa MW: 28094.1 Da PI: 8.3339 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 216.6 | 7.6e-67 | 6 | 171 | 2 | 169 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnv.ekeesastsv 96 ++f+ +eq+CyvqC+fC+til+vsvP +sl++vvtvrCGhCtsllsvn++k s ++ ++ l ++++++ee + e+ + +++ ++++ +++ 29631.m001046 6 HLFDLPEQICYVQCGFCDTILLVSVPGSSLSMVVTVRCGHCTSLLSVNMMKVSF-VPFQQLLASLTHDQQKEEINLEGPDARKTLdIERSLSMAAC 100 7899********************************************988774.46666666666677777777776665555404444444444 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 s + e++++ v +++PPekrqr+Psaynrfikeei+r+ka+nPd++h+eafs+aaknWa P+ih++ 29631.m001046 101 SDDNKLEEDKNPVN--RVINKPPEKRQRAPSAYNRFIKEEIRRLKAENPDMAHKEAFSTAAKNWANNPPIHYK 171 44332333333344..4589***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.2E-65 | 11 | 171 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.7E-8 | 114 | 167 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.8E-6 | 125 | 197 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 1.67E-5 | 126 | 197 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSTLNHLFDL PEQICYVQCG FCDTILLVSV PGSSLSMVVT VRCGHCTSLL SVNMMKVSFV 60 PFQQLLASLT HDQQKEEINL EGPDARKTLD IERSLSMAAC SDDNKLEEDK NPVNRVINKP 120 PEKRQRAPSA YNRFIKEEIR RLKAENPDMA HKEAFSTAAK NWANNPPIHY KEGGENYCRQ 180 EEEKATWSRD AAENKMRIHH RNLIILNRRC MAFCFDKFQV NIEGKSFHER KTPRHSIWAA 240 TPFK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29631.m001046 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025014264.1 | 1e-158 | axial regulator YABBY 4 isoform X2 | ||||
Swissprot | Q9LDT3 | 2e-72 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | B9SHC4 | 0.0 | B9SHC4_RICCO; Axial regulator YABBY4, putative | ||||
STRING | XP_002525393.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 1e-74 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | 29631.m001046 |
Publications ? help Back to Top | |||
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