PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29631.m001039 | ||||||||
Common Name | RCOM_0528830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bHLH | ||||||||
Protein Properties | Length: 157aa MW: 17792.4 Da PI: 10.468 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.1 | 0.00074 | 12 | 59 | 2 | 53 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 r n+ Er RR +++ +++L ++l + s K++ +Av+++++ 29631.m001039 12 RIQRNMKERDRRTLMKHHLSRLESVLGRQ----SSKMTVPNLIDEAVKHVRE 59 6778*******************999887....6777777777777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.06E-8 | 8 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.394 | 10 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.7E-6 | 12 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MDRNTSLSSS ARIQRNMKER DRRTLMKHHL SRLESVLGRQ SSKMTVPNLI DEAVKHVREM 60 HDRIEELKVR KAQAAGGYVQ TSRMDDQVAC KQLKNIETEV NLVSGLNKNF MLHEVIHVLQ 120 EEGAQAISPR IGIDTVRVHE RLKGLMDPGL ATASRSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29631.m001039 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025014254.1 | 2e-94 | LOW QUALITY PROTEIN: transcription factor bHLH168-like | ||||
TrEMBL | B9SHB7 | 1e-111 | B9SHB7_RICCO; Uncharacterized protein | ||||
STRING | XP_002525386.1 | 1e-111 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10586.1 | 3e-20 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 29631.m001039 |