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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29620.m000559 | ||||||||
Common Name | LOC8265598, RCOM_0512220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | C3H | ||||||||
Protein Properties | Length: 456aa MW: 49406.8 Da PI: 7.9196 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.4 | 3.6e-11 | 55 | 81 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+F+H+p 29620.m000559 55 PGEPDCVYYLRTGLCGYGNNCRFNHPP 81 5789*********************97 PP | |||||||
2 | zf-CCCH | 36.4 | 8.7e-12 | 99 | 123 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG++Ck++H++ 29620.m000559 99 QPDCGYYLKTGTCKYGSTCKYHHPR 123 789********************96 PP | |||||||
3 | zf-CCCH | 38.3 | 2.3e-12 | 145 | 168 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ 29620.m000559 145 KSCPYYMRTGSCKFGVACKFHHPQ 168 66********************97 PP | |||||||
4 | zf-CCCH | 39.5 | 9.2e-13 | 293 | 318 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tGtCkyG+ Ck++H++ 29620.m000559 293 DQPECRYFMNTGTCKYGSDCKYHHPK 318 689*********************96 PP | |||||||
5 | zf-CCCH | 33.4 | 7.4e-11 | 338 | 364 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++ +G Ck+G++C+F H++ 29620.m000559 338 PGQPICSNYSMYGLCKFGPTCRFDHPF 364 5789*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 9.7E-7 | 54 | 81 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.732 | 54 | 82 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-8 | 56 | 81 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.55E-6 | 59 | 80 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 60 | 79 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.643 | 96 | 124 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 96 | 123 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-9 | 99 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 100 | 124 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-4 | 102 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 140 | 169 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.352 | 141 | 169 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.7E-5 | 143 | 168 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-10 | 144 | 168 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-5 | 146 | 167 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.2E-6 | 291 | 318 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.643 | 291 | 319 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-10 | 293 | 318 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.8E-7 | 294 | 320 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.5E-6 | 297 | 318 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-6 | 337 | 363 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-6 | 337 | 364 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.202 | 337 | 365 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-7 | 339 | 364 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MPDNSNNNNS NRQVKSNAVS NQSPDNIEEA IWRLKIHDNQ EQGGMAPSSP YPDRPGEPDC 60 VYYLRTGLCG YGNNCRFNHP PYAAQGNQFK EELPERVGQP DCGYYLKTGT CKYGSTCKYH 120 HPRDRNGAGP VSFNIVGLPM RQDEKSCPYY MRTGSCKFGV ACKFHHPQPA PLGTGLPFTG 180 PAASGPMASS NLPSSGLPYV GGLPTWSLPR APYVSGPRLQ GPQTYMPAVL SPSQGVVAAQ 240 GWNTYVGNLS PMSSGSVLGS SIVYNSRNQS ESGSSGQVHM LSTTSSNLPE RPDQPECRYF 300 MNTGTCKYGS DCKYHHPKER IAQLATNSIG PVGLPSRPGQ PICSNYSMYG LCKFGPTCRF 360 DHPFTGYPYG YSLSLQPLSI IDSSLLSYPR MSPPALSSES PISLSSKFPD WVQNPDGASS 420 KHQNSDRNTK ISDDQPEQAG SPPPHSSQAS SEPSHD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29620.m000559 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002528968.1 | 0.0 | zinc finger CCCH domain-containing protein 3 isoform X1 | ||||
TrEMBL | B9SSJ9 | 0.0 | B9SSJ9_RICCO; Zinc finger protein, putative | ||||
STRING | XP_002528968.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8030 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-124 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | 29620.m000559 |
Entrez Gene | 8265598 |