PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29603.m000536
Common NameLOC8276170, RCOM_0492560
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 230aa    MW: 25989.7 Da    PI: 8.1146
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29603.m000536genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-056486123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C++ F++   L  H+++H
  29603.m000536 64 YTCSFCKREFRSAQALGGHMNVH 86
                   9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.47E-66190No hitNo description
PROSITE profilePS5015711.246491IPR007087Zinc finger, C2H2
SMARTSM003550.00386486IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-66487IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEKNSLNNSL KDHSIASRAC NNNNNNNNNN NNNKQTRYSW NYNSNSQSFG EDYLGGFSWP  60
PRSYTCSFCK REFRSAQALG GHMNVHRRDR ARLRQSPPRD GQCTMLNLNI NPNPNNRTPS  120
SPFTCMIPSS APAPPTTTTT ISALSSPSFA SSSETKKWVI DDSTFRDPIS PITKARTQKS  180
LFDAEEFDEL TQEDGCKFLK KSEIVRLDLE IGLFNDSKEE LDLELRLGYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-145986229superman protein
2l1o_A5e-145986229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29603.m000536
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529318.11e-170transcriptional regulator SUPERMAN
TrEMBLB9STJ91e-169B9STJ9_RICCO; Transcriptional regulator SUPERMAN, putative
STRINGXP_002529318.11e-170(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-25C2H2 family protein