PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29603.m000513 | ||||||||
Common Name | LOC8285191, RCOM_0491730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bHLH | ||||||||
Protein Properties | Length: 219aa MW: 24990.2 Da PI: 5.089 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.6 | 1.3e-09 | 68 | 116 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ rE+ RR+r+N++f+ L ++l + + + +K + L A++ +++L 29603.m000513 68 VTKACREKLRRERLNDRFQDLSSVLEPE---RPARTDKPSLLDDAIRVLNQL 116 57889**********************9...99****************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-12 | 58 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.32E-7 | 63 | 121 | No hit | No description |
PROSITE profile | PS50888 | 12.862 | 65 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.1E-7 | 69 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-9 | 71 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.7E-8 | 71 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MDSLEEGSCW DFLDYSFIEE TTTSSDLLWP NSNNNLSEID FSSSGGAVSE EKQCSRKRAR 60 GDSCSKPVTK ACREKLRRER LNDRFQDLSS VLEPERPART DKPSLLDDAI RVLNQLKTEA 120 QELKETNEKL LEEIKCLKAE KNELREEKLT LKADKERTEQ QLKIMAVRPP GYMPAHPAAY 180 HAAMNKMAIY PSFGLIPMWQ LPPAAQDTSK DHEYWPPAA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29603.m000513 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002529295.1 | 1e-162 | transcription factor bHLH104 | ||||
Swissprot | Q8L467 | 4e-75 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | B9STH6 | 1e-161 | B9STH6_RICCO; DNA binding protein, putative | ||||
STRING | XP_002529295.1 | 1e-161 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8179 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.2 | 7e-62 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 29603.m000513 |
Entrez Gene | 8285191 |