PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29600.m000538
Common NameRCOM_0486690
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HD-ZIP
Protein Properties Length: 731aa    MW: 80232.8 Da    PI: 6.0063
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29600.m000538genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2061116156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  29600.m000538  61 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 116
                    688999***********************************************999 PP
2START225.12.1e-702504701206
                    HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
          START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                    ela +a++el+++a+ +ep+W++s     + +n+de++++f+++ +     ++ ea+r++++v+m++ +lve l+d++ qW++ +     +a+tle
  29600.m000538 250 ELAVAAMEELLRMAQMGEPLWMSSHdgtnSALNEDEYIRIFPRGIGpkpagFKCEASRETALVIMNHINLVEYLMDVN-QWSTVFSgivsRAMTLE 344
                    57899**********************999*************999********************************.***************** PP

                    EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
          START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                    v+s+g      galq+m+ae+q+++plvp R+++fvRy++q+ +g+w++vdvS+d+ ++ p     +R++++pSg+li++++ng+s+vtw+ehv++
  29600.m000538 345 VLSTGvagnynGALQVMTAEFQLPTPLVPtRESYFVRYCKQHAEGTWAVVDVSLDNLRPSPA----ARCRRRPSGCLIQEMPNGYSQVTWIEHVEV 436
                    ***********************************************************995....****************************** PP

                    -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 173 kgrlphwllrslvksglaegaktwvatlqrqcek 206
                    ++r +h+l+++lv+sg+a+gak+wvatl+rqce+
  29600.m000538 437 DDRGVHSLYKQLVSSGHAFGAKRWVATLDRQCER 470
                    ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-2339116IPR009057Homeodomain-like
SuperFamilySSF466891.09E-1947118IPR009057Homeodomain-like
PROSITE profilePS5007116.92558118IPR001356Homeobox domain
SMARTSM003891.2E-1959122IPR001356Homeobox domain
CDDcd000862.50E-1961119No hitNo description
PfamPF000464.1E-1861116IPR001356Homeobox domain
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PROSITE profilePS5084844.525241473IPR002913START domain
SuperFamilySSF559614.67E-35243472No hitNo description
CDDcd088751.08E-131245469No hitNo description
SMARTSM002343.7E-66250470IPR002913START domain
PfamPF018522.6E-59251470IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-4350453IPR023393START-like domain
SuperFamilySSF559619.62E-25489723No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MFQPNMLMEG QLHHLDMTQN TSESDLARIR DEEFDSTNTK SGSDNHEGAS GDDQDPRPNK  60
KKRYHRHTQH QIQEMEAFFK ECPHPDDKQR KELSRELGLE PLQVKFWFQN KRTQMKTQHE  120
RHENTQLRTE NEKLRADNMR YREALSNASC PNCGGPTAIG EMSFDEHHLR LENARLREEI  180
DRISAIAAKY VGKPVVNYPL LSAPMPPRPL ELGVGNFGAQ PGIGGEMYGA GDLLRSISAP  240
SEADKPMIIE LAVAAMEELL RMAQMGEPLW MSSHDGTNSA LNEDEYIRIF PRGIGPKPAG  300
FKCEASRETA LVIMNHINLV EYLMDVNQWS TVFSGIVSRA MTLEVLSTGV AGNYNGALQV  360
MTAEFQLPTP LVPTRESYFV RYCKQHAEGT WAVVDVSLDN LRPSPAARCR RRPSGCLIQE  420
MPNGYSQVTW IEHVEVDDRG VHSLYKQLVS SGHAFGAKRW VATLDRQCER LASAMATNIP  480
TGEVGVITNQ EGRKSMLKLA ERMVISFCAG VSASTAHTWT TLSGTGADDV RVMTRKSVDD  540
PGRPPGIVLS AATSFWLPVP PKRVFDFLRD ENSRNQWDIL SNGGVVQEMA HIANGRDTGN  600
CVSLLRVNSA NSSQSNMLIL QESCTDPTAS FVIYAPVDIV AMNVVLNGGD PDYVALLPSG  660
FAILPDGTTA HGGGIGGESV SAGGSLLTVA FQILVDSVPT AKLSLGSVAT VNNLIACTVE  720
RIKAALSCEN A
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29600.m000538
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002524172.20.0homeobox-leucine zipper protein HDG2 isoform X3
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLB9SDV30.0B9SDV3_RICCO; Homeobox protein, putative
STRINGXP_002524172.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2