PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29596.m000719
Common NameLOC8280352, RCOM_0482890
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GATA
Protein Properties Length: 327aa    MW: 35837.8 Da    PI: 4.5923
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29596.m000719genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.4e-16203239135
           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  29596.m000719 203 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 239
                    *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.486398IPR010399Tify domain
SMARTSM009794.5E-66398IPR010399Tify domain
PfamPF062001.3E-96697IPR010399Tify domain
PfamPF062038.8E-15131172IPR010402CCT domain
PROSITE profilePS5101712.65131173IPR010402CCT domain
SMARTSM004015.2E-10197250IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.616197253IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-11198247No hitNo description
Gene3DG3DSA:3.30.50.109.0E-15201244IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.97E-16202246No hitNo description
PfamPF003206.1E-14203239IPR000679Zinc finger, GATA-type
PROSITE patternPS003440203230IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAAANPLPLQ ARPYEDHVQA PIQIDDDDVR EYEDGDAMDD VEDNTPMNSG VNVAEHGGGG  60
VIVASRTSEL TLSFEGEVFV FPAVTPEKVQ AVLLLLGGRD IPTAVPTIEV PCVQNNRGVD  120
DTPKRSNLSR RIASLVRFRE KRKERCFDKK IRYTVRKEVA QRMHRKNGQF ASLKESSGGS  180
SWDSAQSCLQ DGTPRPETVV RRCQHCGVSE NNTPAMRRGP AGPRTLCNAC GLMWANKGTL  240
RDLSKGGRNA STDQIEPETP IDVKPSIMEG EFSGNQDEHV LQEASEDLTS TLPMRVVHSS  300
ADDDDQEPLV ELANPSDADL DIPSNFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120125DTPKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29596.m000719
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527369.10.0GATA transcription factor 24 isoform X1
SwissprotQ8GXL75e-76GAT24_ARATH; GATA transcription factor 24
TrEMBLB9SN000.0B9SN00_RICCO; GATA transcription factor, putative
STRINGXP_002527369.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-69ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]