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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
29596.m000688 |
| Common Name | LOC8280322, RCOM_0481980 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
| Family |
bHLH |
| Protein Properties |
Length: 349aa MW: 39671.6 Da PI: 4.5974 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 29596.m000688 | genome | JCVI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 36.8 | 7e-12 | 186 | 229 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L
29596.m000688 186 LMAERRRRKRLNDRLAMLRSIVPKiS------KMDRTSILGDTIDYVKEL 229
589*********************66......****************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 349 aa
Download sequence Send
to blast |
MEINRQQGFL EEFLSLRRDN LETIPSFPSE IGEMFSNGWN FSCFDEFDGI NSVASTLFAP 60
NSFYQEFSSS PLEHQDFSHY YFNEVSCPFG DPPFTDDFSA PQFTDSSYNN LDTPPFPVQE 120
GHTPMSLMEN DQETGLLPNH VQISEMQAAC KFEPSQSPEV PVFSIGACPE RKIRSKKLEG 180
QPSKNLMAER RRRKRLNDRL AMLRSIVPKI SKMDRTSILG DTIDYVKELL ERINSLQQEL 240
EMGSNQLNIL KDTKASEFIV RNSPKFHVER RNEDTQIEIC CASKPGLLLS TVTALEALGL 300
EIQQCVISCF NDFSIQASCS EELEQRKMTN SEDIKQALFR SAGYGGRCL
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 188 | 195 | ERRRRKRL |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Sharma N, et al.
NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
Development, 2016. 143(4): p. 682-90
[PMID:26758694] - Chen YS, et al.
Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
Plant Mol. Biol., 2017. 93(3): p. 299-311
[PMID:27866313] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
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