PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29593.m000174
Common NameLOC8274902, RCOM_0479530
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 500aa    MW: 53941.9 Da    PI: 8.1147
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29593.m000174genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.9e-11132156226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    +++ C +++ t tCk+Gd+CkF H+
  29593.m000174 132 GEKDCAHYMLTRTCKFGDSCKFDHP 156
                    7889********************9 PP
2zf-CCCH36.11.1e-11183209127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++ C++f++t  CkyG++CkF+H++
  29593.m000174 183 PGEPDCPYFLKTQRCKYGSKCKFNHPK 209
                    5789*********************96 PP
3zf-CCCH37.63.6e-12231255327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    +++C f+a+tG Ck+G++CkF+H++
  29593.m000174 231 EPICAFYAKTGRCKFGATCKFHHPK 255
                    799********************96 PP
4zf-CCCH38.51.9e-12308333126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    ++++ C+f+++tG CkyG++C+++H+
  29593.m000174 308 PGEVDCPFYLKTGSCKYGATCRYNHP 333
                    57899********************9 PP
5zf-CCCH40.25.5e-13393417226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    ++++C+++++tG+Ck+G+rC+F+H+
  29593.m000174 393 GHAECDYYMKTGECKFGERCRFHHP 417
                    7899********************8 PP
6zf-CCCH39.87.7e-13449470627
                    -SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                    C+++++tGtCkyG++CkF H+p
  29593.m000174 449 CPYYMKTGTCKYGATCKFDHPP 470
                    ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.244130158IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-4130157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-5131157IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8132156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4136155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507182210IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-6182209IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9184209IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6187213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-7188212IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.929228256IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6228255IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9231255IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6231256IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5233254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.432307335IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7307334IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-10309333IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5311334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4313332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.934391419IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6391420IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6391418IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10393417IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5397417IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666443471IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6443470IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6447470IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-10449470IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5449468IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MANKLYGYGS SYGATASSAS ASALKRYLSD SDPSKYSSSS IMYSSDRAIA SSAAATGAPW  60
TPPPGVDVPP ASIEPHLLAG LKRSSEVLYH PTVMGAHNTI GQTEAWYSTN YLTKRSRFES  120
ASNYSIYPQR PGEKDCAHYM LTRTCKFGDS CKFDHPVWVP EGGIPNWKEV PLAATTEPLP  180
ERPGEPDCPY FLKTQRCKYG SKCKFNHPKD ELALGSSQSN DVFALPERPS EPICAFYAKT  240
GRCKFGATCK FHHPKDIQIA LGQENCNIMQ NEAAAMTHGT TGDVNAVKAC ISFNQALLHN  300
SKGLPIRPGE VDCPFYLKTG SCKYGATCRY NHPDRNAINP PAAAIGHPLL ASPAANLNLG  360
DINPAASIYQ AIYPSFSSPM LGVGPTIYPQ RPGHAECDYY MKTGECKFGE RCRFHHPIDR  420
SAPTATQAQQ QAVKLTLAGL PRREGAVHCP YYMKTGTCKY GATCKFDHPP PGEVMAIASQ  480
GTSTSAGDVE GAEGGIVQVL
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29593.m000174
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528658.10.0zinc finger CCCH domain-containing protein 37
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLB9SRN90.0B9SRN9_RICCO; Uncharacterized protein
STRINGXP_002528658.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)