PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29589.m001269
Common NameRCOM_0475290
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 416aa    MW: 46717.3 Da    PI: 8.1179
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29589.m001269genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.23.6e-07244266123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C+ Cgk F+r  nL+ H+r H
  29589.m001269 244 HYCQVCGKGFKRDANLRMHMRAH 266
                    68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.69E-6242269No hitNo description
PROSITE profilePS5015712.653244271IPR007087Zinc finger, C2H2
SMARTSM003550.0034244266IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-6244270IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280246266IPR007087Zinc finger, C2H2
SMARTSM0035577303336IPR015880Zinc finger, C2H2-like
SMARTSM0035522341363IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MIAGLSSRNF SNHHQQQHHH VLQVYPAASD DIVSTSLEAS SSSEIGHANS LLYSLSVVKD  60
KVNQVQSLVS ILTSPDHHHQ SYQQQNPEPN SIANLGTIIQ EIIVTASSMM FTCQQMAIGS  120
SNSINNNASE LHQPAPPQPK VAAPQENVLL PNSQDHQRGQ SFFASENFDW YDNNNYSNNS  180
CNGTENNQTA SGMHNVISIN TNKVERKELS ENFSDVLQEG NNKSIKSYDI IELDASYLLA  240
KYTHYCQVCG KGFKRDANLR MHMRAHGDEY KTSAALSNPM KNINTSAIGD SSEDSVMKLP  300
RKYSCPQEGC RWNQKHAKFQ PLKSMICVKN HYKRSHCPKM YVCKRCNRKQ FSVLSDLRTH  360
EKHCGDLKWL CCCGTTFSRK DKLMGHVALF VGHTPAITSF NNPAKVESHQ MQLDDR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29589.m001269
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002523732.20.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT241e-107STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLB9SCL30.0B9SCL3_RICCO; Uncharacterized protein
STRINGXP_002523732.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.12e-89C2H2 family protein