PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29589.m001269 | ||||||||
Common Name | RCOM_0475290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | C2H2 | ||||||||
Protein Properties | Length: 416aa MW: 46717.3 Da PI: 8.1179 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.2 | 3.6e-07 | 244 | 266 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H 29589.m001269 244 HYCQVCGKGFKRDANLRMHMRAH 266 68*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.69E-6 | 242 | 269 | No hit | No description |
PROSITE profile | PS50157 | 12.653 | 244 | 271 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0034 | 244 | 266 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.3E-6 | 244 | 270 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 246 | 266 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 77 | 303 | 336 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 22 | 341 | 363 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MIAGLSSRNF SNHHQQQHHH VLQVYPAASD DIVSTSLEAS SSSEIGHANS LLYSLSVVKD 60 KVNQVQSLVS ILTSPDHHHQ SYQQQNPEPN SIANLGTIIQ EIIVTASSMM FTCQQMAIGS 120 SNSINNNASE LHQPAPPQPK VAAPQENVLL PNSQDHQRGQ SFFASENFDW YDNNNYSNNS 180 CNGTENNQTA SGMHNVISIN TNKVERKELS ENFSDVLQEG NNKSIKSYDI IELDASYLLA 240 KYTHYCQVCG KGFKRDANLR MHMRAHGDEY KTSAALSNPM KNINTSAIGD SSEDSVMKLP 300 RKYSCPQEGC RWNQKHAKFQ PLKSMICVKN HYKRSHCPKM YVCKRCNRKQ FSVLSDLRTH 360 EKHCGDLKWL CCCGTTFSRK DKLMGHVALF VGHTPAITSF NNPAKVESHQ MQLDDR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00522 | DAP | Transfer from AT5G22890 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29589.m001269 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002523732.2 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
Swissprot | Q0WT24 | 1e-107 | STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | B9SCL3 | 0.0 | B9SCL3_RICCO; Uncharacterized protein | ||||
STRING | XP_002523732.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8099 | 30 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 2e-89 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 29589.m001269 |