PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29588.m000866

Common Name

LOC8259753, RCOM_0470980

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

C2H2

Protein Properties

Length: 280aa MW: 31316.8 Da PI: 8.5009

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29588.m000866	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	108	130	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H 29588.m000866 108 FSCNYCQRKFYSSQALGGHQNAH 130 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.36E-6	104	135	No hit	No description
PROSITE profile	PS50157	11.427	108	135	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	110	130	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MEPPRSETCH SETSSIISVS NALKPSMESP KEAQQLKQEQ EQEQENQEER VQKQQEDGKH 60 DHLVLDLSLS SKDSKAELNL IDTFDLGPSQ KSLSDNPHQG NETEPRVFSC NYCQRKFYSS 120 QALGGHQNAH KRERTLAKRG QRISAASFAL GHHHHSHLNR YSSMASLPLH GSLNRSLGIQ 180 VHSMIHKPTF IQSSILGSSN LYGQNGWSRQ PFDQQPAVGR LASESFHMGS PSGNGVARFE 240 SARKFSPVRE GIGGYWWDGG VNHLKTKKDD LQKLDLSLKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29588.m000866

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002527314.1	0.0	zinc finger protein 1
TrEMBL	B9SMU5	0.0	B9SMU5_RICCO; Zinc finger protein, putative
STRING	XP_002527314.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1439	31	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	4e-44	zinc-finger protein 1

Link Out ? help Back to Top
Phytozome	29588.m000866
Entrez Gene	8259753