PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29588.m000866
Common NameLOC8259753, RCOM_0470980
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 280aa    MW: 31316.8 Da    PI: 8.5009
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29588.m000866genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023108130123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C + F ++  L  H++ H
  29588.m000866 108 FSCNYCQRKFYSSQALGGHQNAH 130
                    89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.36E-6104135No hitNo description
PROSITE profilePS5015711.427108135IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEPPRSETCH SETSSIISVS NALKPSMESP KEAQQLKQEQ EQEQENQEER VQKQQEDGKH  60
DHLVLDLSLS SKDSKAELNL IDTFDLGPSQ KSLSDNPHQG NETEPRVFSC NYCQRKFYSS  120
QALGGHQNAH KRERTLAKRG QRISAASFAL GHHHHSHLNR YSSMASLPLH GSLNRSLGIQ  180
VHSMIHKPTF IQSSILGSSN LYGQNGWSRQ PFDQQPAVGR LASESFHMGS PSGNGVARFE  240
SARKFSPVRE GIGGYWWDGG VNHLKTKKDD LQKLDLSLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap29588.m000866
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527314.10.0zinc finger protein 1
TrEMBLB9SMU50.0B9SMU5_RICCO; Zinc finger protein, putative
STRINGXP_002527314.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.14e-44zinc-finger protein 1