PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29585.m000603
Common NameRCOM_0465580
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 143aa    MW: 16252.6 Da    PI: 10.1872
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29585.m000603genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.48.3e-06631011255
                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    R +++ +++  L++l+ +      +K + a++L++A  YIk Lq
  29585.m000603  63 RSQKLSDKITALQKLVSPY-----GKTDTASVLQEASLYIKLLQ 101
                    7899*************99.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.04E-649105No hitNo description
Gene3DG3DSA:4.10.280.101.3E-850110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.36251100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-963111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MRKRSIDVIS QLHQGGITNL TENTTFSDWK SNKRRKATSF EEQWLHQVQK SSNVKEQKVT  60
VTRSQKLSDK ITALQKLVSP YGKTDTASVL QEASLYIKLL QQQIQNLFQM LSSSCPSQKI  120
DGEMLDLQSK GLCLFPTSLK MDS
Cis-element ? help Back to Top
SourceLink
PlantRegMap29585.m000603
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015580400.14e-96uncharacterized protein LOC8265985 isoform X1
RefseqXP_015580401.14e-96uncharacterized protein LOC8265985 isoform X1
RefseqXP_015580402.14e-96transcription factor bHLH133 isoform X2
SwissprotQ9LT679e-17BH113_ARATH; Transcription factor bHLH113
TrEMBLB9SR422e-99B9SR42_RICCO; Uncharacterized protein
STRINGXP_002528461.11e-100(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133551522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.14e-19bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]