PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29576.m000226
Common NameLOC8262313, RCOM_0453870
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 445aa    MW: 51312.5 Da    PI: 6.7685
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29576.m000226genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.89.6e-26120214183
       trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                    +Wt+++v++Li+a+++++e++++++           ++k++W+ vsk+m+ergf++sp+qC++k+++lnkryk+++++ +++ +++++++ +++d
  29576.m000226 120 KWTDKMVRLLITAVSYIGEDMSSDCnggirrkfavlQRKGKWKLVSKAMAERGFHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCQVVENPALLD 214
                    7**********************9889999999999**********************************************5588888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.0E-23118243No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEGNLSQGNM LPGGTPFGGL DLQGSLSVHH QTQYQHAVHQ PHHVHRQGSA IHPSIREGFP  60
LTIGTMNNSD QNMSLTNYNT GDKGKISTSD EDEPSYSEDG VDGQNEASRG KKGSPWRRVK  120
WTDKMVRLLI TAVSYIGEDM SSDCNGGIRR KFAVLQRKGK WKLVSKAMAE RGFHVSPQQC  180
EDKFNDLNKR YKRLNDILGR GTSCQVVENP ALLDVIDFLT EKAKDDVRKI LSSKHLFYEE  240
MCSYHNDNRL HLPHDPALQH SLQLALRRKE DHDNDDMRRN QHDDLEEDDQ EVETEDRDEV  300
EDNLISRRDG KGIDGALGGS MKRFRHAQGH VDACFRISSQ DNVKGSYSHL QIPQVDINQM  360
SSESTRAALL QKQWMESCTL QLEEQKLQIQ LEMLELEKQR FKWKRFSRKR DHELEKLRLE  420
NERMKLENER MALELKRKEM VVDLT
Cis-element ? help Back to Top
SourceLink
PlantRegMap29576.m000226
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002532431.10.0uncharacterized protein LOC8262313
RefseqXP_015582887.10.0uncharacterized protein LOC8262313
RefseqXP_015582889.10.0uncharacterized protein LOC8262313
RefseqXP_015582890.10.0uncharacterized protein LOC8262313
RefseqXP_025015445.10.0uncharacterized protein LOC8262313
TrEMBLB9T2G20.0B9T2G2_RICCO; Transcription factor, putative
STRINGXP_002532431.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-152sequence-specific DNA binding transcription factors