PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29576.m000224
Common NameLOC8262314, RCOM_0453550
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 675aa    MW: 74684.9 Da    PI: 6.4727
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29576.m000224genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.58.9e-2981165187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    rW++qe+laL+++r++m+ ++r+++ k+plW+evs+k++e g++rs+k+Ckek+en+ k++k++keg+ ++  ++ +t+++fdqlea
  29576.m000224  81 RWPRQETLALLKIRSDMDVTFRDASVKGPLWDEVSRKLAELGYNRSAKKCKEKFENVFKYHKRTKEGRTGK--QEGKTYRFFDQLEA 165
                    8********************************************************************96..55557*******85 PP
2trihelix104.29.4e-33481566187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    rW+k ev+aLi++r++++++++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a
  29576.m000224 481 RWPKVEVQALIDLRTNLDSKYQENGPKGPLWEEISAGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFQQLDA 566
                    8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.5E-478140IPR001005SANT/Myb domain
PfamPF138376.4E-1980165No hitNo description
PROSITE profilePS500907.08580138IPR017877Myb-like domain
CDDcd122031.58E-2580145No hitNo description
SMARTSM007170.0032478540IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-4480537IPR009057Homeodomain-like
PfamPF138371.1E-22480567No hitNo description
CDDcd122035.93E-29480545No hitNo description
PROSITE profilePS500907.05480538IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MLGDSSSVLA TTTTASTGGG AGGGSEAAAA PPRQLPASGG ESTISEVGHV GSNNNSGEDD  60
KRGSGGGGGG DEGDRSFGGN RWPRQETLAL LKIRSDMDVT FRDASVKGPL WDEVSRKLAE  120
LGYNRSAKKC KEKFENVFKY HKRTKEGRTG KQEGKTYRFF DQLEAFESHH PSPQPQPQQQ  180
QQLPPPLKPQ APAATIAMPI VSPLPLAATI GASHITTVPS ATAVLATNMS SQGIVTTGIN  240
LAIPSFPSST NPTILPLPQA TNPTNLNQSQ PHVQSSFPNY SPDLLSNSTS SSTSSDVEIQ  300
GRRRRKRKWK DFFERLMKEV IHKQEDMQRK FLEAIEKREH DRMVREESWR MQEMARINRE  360
REILAQERSI AAAKDAAVMA FLQKLSEQQN PGQQQVQNNP PQPPPQPVQP PQPPPSAIPQ  420
SQPQPQPQSQ PQPQPQPAPV PQPPPVATAV AAPQQPQPAI INLDIKSDNG DQSFMPASSS  480
RWPKVEVQAL IDLRTNLDSK YQENGPKGPL WEEISAGMRK LGYNRNAKRC KEKWENINKY  540
FKKVKESNKR RPEDSKTCPY FQQLDALYKE KHSKIDVGNI SSSSNIQIMK PDQINSVPLM  600
VRPEQQWPPP SHHQQQEQGH HHDSVMEDLE SEDNQNHDQD EDDDDKDMDD DEEDEASGYE  660
IVANSNRPTS MSSAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301307RRRRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap29576.m000224
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2276028e-61CU227602.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002532429.10.0trihelix transcription factor GT-2
TrEMBLB9T2G00.0B9T2G0_RICCO; Uncharacterized protein
STRINGXP_002532429.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-72Trihelix family protein