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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29567 | ||||||||
Common Name | SELMODRAFT_29567 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | Dof | ||||||||
Protein Properties | Length: 61aa MW: 7239.09 Da PI: 10.1215 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 66.4 | 4.7e-21 | 7 | 61 | 3 | 57 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrk 57 ++ +cprC+s nt+f yynn qPr+ C+aC++ Wt+GG +r Gg +rk 29567 7 DNVYQCPRCQSYNTRFDYYNNEKRDQPRFACRACKKQWTQGGKIRAASSGGRKRK 61 67889******************************************99998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-11 | 6 | 61 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.1E-27 | 7 | 61 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 19.787 | 10 | 61 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 61 aa Download sequence Send to blast |
EPHELPDNVY QCPRCQSYNT RFDYYNNEKR DQPRFACRAC KKQWTQGGKI RAASSGGRKR 60 K |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024523888.1 | 4e-39 | dof zinc finger protein DOF3.1-like | ||||
Swissprot | Q9FZA4 | 6e-14 | DOF14_ARATH; Dof zinc finger protein DOF1.4 | ||||
TrEMBL | D8QY07 | 4e-38 | D8QY07_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ35120 | 7e-39 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.2 | 2e-16 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | 29567 |
Entrez Gene | 9643459 |
Publications ? help Back to Top | |||
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