PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29496.m000135
Common NameLOC8281256, RCOM_0446700
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family CO-like
Protein Properties Length: 378aa    MW: 41213.7 Da    PI: 6.229
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29496.m000135genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.52.1e-061749436
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                   r+C+++     + +C+ ++ +lC++C   +H  
  29496.m000135 17 RVCDTCRAAACTVYCKADSAYLCATCDARIHAA 49
                   79******99********************954 PP
2zf-B_box30.66.9e-1059104342
       zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                     ++C+ +e+ ++ + C+ +   lC++C   +H+       H++vp+
  29496.m000135  59 VWVCEACERAPAAFLCKADAASLCATCDADIHSAnplarrHQRVPI 104
                    689*****************************66899999**9997 PP
3CCT70.34.7e-24309352144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  29496.m000135 309 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 352
                    9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.1E-101461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.1961461IPR000315B-box-type zinc finger
CDDcd000211.47E-61761No hitNo description
PROSITE profilePS5011911.06457104IPR000315B-box-type zinc finger
PfamPF006431.1E-759104IPR000315B-box-type zinc finger
CDDcd000212.13E-860104No hitNo description
SMARTSM003361.8E-1162104IPR000315B-box-type zinc finger
PfamPF062037.4E-18309351IPR010402CCT domain
PROSITE profilePS5101716.648309351IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MLKEENTGGG GGNNWARVCD TCRAAACTVY CKADSAYLCA TCDARIHAAN RVASRHGRVW  60
VCEACERAPA AFLCKADAAS LCATCDADIH SANPLARRHQ RVPIHPISGC LHGPQAGPVG  120
GGGETTTEDM FMTEDGEDGV GEEEEDEAAS WLLLNPVKNG NSQNNGTNGF LFGGEVEEYL  180
DLFEYNSNSC GENQYADNHQ HYSGTVHQKS HEGDSVVPVR CGDGAGKDHV HQQYHNFQLG  240
LEFESSKAAY SYNGSISHSV SISPMDVGVV PDSTMSEASI SHPRPPKGTI DLFSGPPIQM  300
PSQLSPRDRE ARVLRYREKK KTRKFEKTIR YASRKAYAET RPRIKGRFAK RTDVEVEVDQ  360
IFSTALMAET GYGIVPSF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29496.m000135
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002532886.10.0zinc finger protein CONSTANS-LIKE 2
SwissprotQ965021e-143COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLB9T3R70.0B9T3R7_RICCO; Zinc finger protein, putative
STRINGXP_002532886.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-129CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]