PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29447.m000032
Common NameLOC8262028, RCOM_0438490
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 554aa    MW: 60700.4 Da    PI: 6.7608
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29447.m000032genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.7e-09360407455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  29447.m000032 360 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 407
                    8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.42E-17354424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.86E-10354411No hitNo description
PROSITE profilePS5088815.663356406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16356424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-6360407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10362412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MESAEFFLNT GIPPPQLPLH FEQNSTWQQQ QQSFSSAMAT QANEFKHNNS SSNHLSDCFY  60
DPNWEKSTDQ SLQFDSALSS MVSSPAASNS NISTESFIIR ELIGKLGNVG STGEISPHSQ  120
PMLAASYNNK NSITGTGNNS TNTSCYTTPL SSPPKLNMSP TDQLSTPLAL NSSVAEFTAD  180
PGFAERAARF SCFGSRSFNG RTSQFGLNKL EMQLMGNANK LPRVSSTPSL KAVGSHHQKG  240
NKNSSPLLQD RSELANSTSQ EESSVSEQNP PNAELNSKKR KTAPKAKSKE APQPNSAKDA  300
EVDDNSNAKR SKGNEKNDVK AEEEHKGNGD DKQNKASTKP PEPPKDYIHV RARRGQATDS  360
HSLAERVRRE KISERMKLLQ DLVPGCNKVT GKALMLDEII NYVQSLQRQV EFLSMKLASV  420
NTRLDINLDT LMSKDIFQTT NQLPHPIFPI DSSASAIFGH QPQQNPALHS NISNGALTHC  480
SVDPLDTGLS HNLNMHLPPL EGFNHTPPQF PTFCEEDLQS IVQMGFTQIP VPEALLPGQN  540
IHSSNQVSYM KTEI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29447.m000032
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002534345.10.0transcription factor bHLH62
SwissprotQ9SRT21e-124BH062_ARATH; Transcription factor bHLH62
TrEMBLB9T7X60.0B9T7X6_RICCO; Transcription factor, putative
STRINGXP_002534345.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-108bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]