PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29428.m000319
Common NameRCOM_0435770
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 551aa    MW: 64037.3 Da    PI: 7.9852
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29428.m000319genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.11.5e-3084169187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    rW++qe+l+L+e+r+++++r+r++++k+plW+evs+ m  e+g++rs k+C+ek+enl k+ykk+k+g+ +r  ++ +++++f+qlea
  29428.m000319  84 RWPRQETLTLLEIRSRLDSRFREANQKGPLWDEVSRIMaDEHGYQRSGKKCREKFENLYKYYKKTKDGKAGR--QDGKHYRFFRQLEA 169
                    8*************************************99******************************98..55667*******85 PP
2trihelix65.61.1e-20399489186
       trihelix   1 rWtkqevlaLiearremeerlrrgk....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                    rW++ e+  Li++r+ me+r+++++    +k++lWee++ km+  g+ r+  +Ckekw+n+n  +   +ege+ + ++e+ +t  yf+ql+
  29428.m000319 399 RWSEPEIFSLIQIRTTMESRFQESSnsgySKENLWEEIAGKMANLGYDRGVDECKEKWKNMNVFFNMATEGEGFKkRKEDLTTSNYFQQLD 489
                    8*********************9766677******************************************9977468899999*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.18977142IPR017877Myb-like domain
SMARTSM007170.3181144IPR001005SANT/Myb domain
PfamPF138372.9E-2183170No hitNo description
CDDcd122037.27E-2183149No hitNo description
PROSITE profilePS500907.143392460IPR017877Myb-like domain
SMARTSM007170.15396462IPR001005SANT/Myb domain
PfamPF138372.8E-16398490No hitNo description
CDDcd122035.27E-23398467No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MSDHHQYGLP DLRQLMAGRT HLQPSPQPTA ESITFFQSRN NNLAPQIAHH HHIYHHDYGT  60
AAAANEVMFP SGLVKLGHDR NNSRWPRQET LTLLEIRSRL DSRFREANQK GPLWDEVSRI  120
MADEHGYQRS GKKCREKFEN LYKYYKKTKD GKAGRQDGKH YRFFRQLEAL YGETSNQIAS  180
ASETTHLTNT NTTFLYQPPS NNINQENQES FQETNNKHSE QSLSFSNTSE FETSSSENND  240
EDLSAIAYMM KRSMEKQKGL STESQSYTCT KAKKNWKGKV KNFVDIQMKK LLESQEAWME  300
RMIKTIEDRE QERMFREEEW TKQESARLDR IHEFWAKERA WMEARDVALM EILRKCTGKG  360
LDLSSSIEKI AIATQNHYNN QDRNAKKIGI DHEVLKASRW SEPEIFSLIQ IRTTMESRFQ  420
ESSNSGYSKE NLWEEIAGKM ANLGYDRGVD ECKEKWKNMN VFFNMATEGE GFKKRKEDLT  480
TSNYFQQLDP YNGQEIARLE GMNSSSSPTS NSYMGSDQMH GSCFQVPANG GGEQLWNKYG  540
LKPRKEKNQQ L
Cis-element ? help Back to Top
SourceLink
PlantRegMap29428.m000319
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581905.10.0trihelix transcription factor PTL
TrEMBLB9SY130.0B9SY13_RICCO; Transcription factor, putative
STRINGXP_002530882.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.13e-92Trihelix family protein