PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29333.m001047
Common NameLOC8284320, RCOM_0419560
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Dof
Protein Properties Length: 308aa    MW: 33785.2 Da    PI: 6.6157
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29333.m001047genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.65e-371368661
         zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                    +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ 
  29333.m001047 13 PNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 68
                   58***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-28167IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6771367IPR003851Zinc finger, Dof-type
PfamPF027012.4E-311367IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101551IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDRGWKPNVE ISPNCPRCGS SNTKFCYYNN YSLTQPRYFC KGCRRYWTKG GSLRNVPVGG  60
GCRKNRRGKS LRLSSTDVAQ SKSLGYGGVT ADSTRHVHGY KGINPSIESC SSSTRSNGSH  120
IDLALVYANF LNPQQPDPKT ASSGFEMQEL GSDHFDPSLD FSGISNVNLD STTVQLHDIG  180
DHNFAGCIPA ISDSSMGDPP SDNHQLMHYC GVDSSSKHKQ EANDHKIPQC TSITHDPINY  240
GLPPLPGEEI GSQEILWPSS HMMEHSHTLQ VTQQQAVLGP DQTQDPNTLL FGNWSPFDLS  300
SDDAFSRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29333.m001047
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6648701e-54EU664870.1 Jatropha curcas microsatellite JATR788 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002524061.10.0dof zinc finger protein DOF3.5
TrEMBLB9SDJ20.0B9SDJ2_RICCO; Zinc finger protein, putative
STRINGXP_002524061.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18173394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.11e-54Dof family protein