 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
29212.m000177 |
| Common Name | RCOM_0402930 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
| Family |
MYB_related |
| Protein Properties |
Length: 172aa MW: 19452.7 Da PI: 4.5655 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 29212.m000177 | genome | JCVI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 26.8 | 1.2e-08 | 7 | 30 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
+W+ Ia++++ gRt++++k++w++
29212.m000177 7 RWSQIAARLP-GRTDNEIKNFWNST 30
5*********.***********986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 172 aa
Download sequence Send
to blast |
MEKRKSRWSQ IAARLPGRTD NEIKNFWNST LKKRLKMNNN NNSNPSTASP NDSDSSEPRD 60
VIGNIIPMHD HDLMTMCMDS SSTSSASIQA MVAGVNNQFD PFSMLTNNGR FELTGAAGLF 120
DMPTCLTQSL KVEDMFGFEN HWQGENLRMG EWDLEGLMEN ISSFPFLDYQ VE
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KM034661 | 2e-45 | KM034661.1 Jatropha curcas clone JcMYB041 MYB family protein gene, complete cds. |
