PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29097
Common NameSELMODRAFT_29097
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family Dof
Protein Properties Length: 64aa    MW: 7370.18 Da    PI: 10.2142
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29097genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof57.72.5e-18363558
  zf-Dof  5 alkcprCdstntkfCyynnysls....qPryfCkaCrryWtkGGalrnv...PvGggrrkn 58
              +cprC+s nt+f yynn   +    qPry C++C+  Wt+GG +r v   P Gg +r +
   29097  3 VYQCPRCQSYNTRFDYYNNEKSTgkrdQPRYACRSCKGKWTQGGQVRVVslsPTGGNKRTS 63
            679****************86533444********************99667788888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027012.4E-27164IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-8164IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
DNVYQCPRCQ SYNTRFDYYN NEKSTGKRDQ PRYACRSCKG KWTQGGQVRV VSLSPTGGNK  60
RTSK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002992665.16e-37uncharacterized protein LOC9630524
RefseqXP_024522107.16e-37uncharacterized protein LOC112343218
TrEMBLD8T5462e-39D8T546_SELML; Uncharacterized protein (Fragment)
STRINGEFJ081964e-40(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.14e-13Dof family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]