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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29005.m000261 | ||||||||
Common Name | RCOM_0372160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB_related | ||||||||
Protein Properties | Length: 85aa MW: 10257 Da PI: 6.2587 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.6 | 3.4e-09 | 7 | 51 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++W+ eE +++ + l ++ W+++a ++ ++t ++k+++ + 29005.m000261 7 QKWSREENKIFEMNYEHLMKEEWERVALLLP-NKTVDDIKLHYKYL 51 89*****************************.***********876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.342 | 1 | 52 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-6 | 3 | 53 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-5 | 5 | 54 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-7 | 6 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.12E-8 | 8 | 58 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.02E-5 | 8 | 52 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MASKETQKWS REENKIFEMN YEHLMKEEWE RVALLLPNKT VDDIKLHYKY LLEDIELIES 60 GLNKCPRIPV KIEKNLHLLA LTKFE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29005.m000261 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B9T104 | 3e-54 | B9T104_RICCO; Uncharacterized protein | ||||
STRING | XP_002531923.1 | 5e-55 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17533 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49010.1 | 2e-11 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | 29005.m000261 |