PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 28959 | ||||||||
Common Name | SELMODRAFT_28959 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | Dof | ||||||||
Protein Properties | Length: 68aa MW: 7912.85 Da PI: 10.3078 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 62.4 | 8.6e-20 | 3 | 66 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnysls....qPryfCkaCrryWtkGGalrnv...PvGggrrknkks 61 +cprC+s nt f yynn + qPry C++C+ Wt+GG +r+v P Gg +rk+k+ 28959 3 VYQCPRCQSYNTWFDYYNNEKSTgkrdQPRYICRSCKGKWTQGGKVRDVslsPTGGNKRKSKAL 66 679****************86533444*********************988889******9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.3E-28 | 1 | 65 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 5.0E-9 | 1 | 64 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 15.109 | 4 | 62 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 68 aa Download sequence Send to blast |
DNVYQCPRCQ SYNTWFDYYN NEKSTGKRDQ PRYICRSCKG KWTQGGKVRD VSLSPTGGNK 60 RKSKALRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024516314.1 | 4e-41 | uncharacterized protein LOC112341077 | ||||
Swissprot | Q9M161 | 9e-12 | DOF41_ARATH; Dof zinc finger protein DOF4.1 | ||||
TrEMBL | D8S8G8 | 1e-42 | D8S8G8_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ19409 | 2e-43 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00940.1 | 4e-14 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | 28959 |
Entrez Gene | 9634755 |
Publications ? help Back to Top | |||
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