PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28880.m000016
Common NameLOC8280825, RCOM_0352020
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 688aa    MW: 76337.1 Da    PI: 9.7945
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28880.m000016genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07588637147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
    28880.m000016 588 RRPFSVTEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 637
                      678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.33E-7391483IPR029071Ubiquitin-related domain
PROSITE profilePS500539.134397467IPR000626Ubiquitin domain
PROSITE profilePS5129414.822583642IPR017930Myb domain
SMARTSM007173.5E-7587640IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-10588638IPR009057Homeodomain-like
SuperFamilySSF466891.52E-15589670IPR009057Homeodomain-like
CDDcd116601.73E-16589639No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPPTP RATRSVRRRG SFKKKVEESQ TCAFDLLAIV AGNLLHDKES  60
TPGSSNTSAD KNQCVAVNDT VKNKWQNDEK NMKVETQDQG SPARKFFISE LVAQDNEQNH  120
CSDDLNLGVA SALATSDCAE RFDAEKLVNG KGKNDMGSFA SKVEVGSSRH REFDGCKLEG  180
ETKKIIKDEP QKFGKVINGT VADMCSFDDP LVWDGKPHAH VSSDSSAKTS LCGNHVSHGS  240
YPANWDDLIV DRDDDENSSG CTHPSTTKKF LRPAPRIGDR RIRKVLASKY WKVAPRMKDG  300
TLSNTGGDSK PFYHKRKNYY KYQRSERLYP FKKRKHFGYG SQSNFEGAIS REFISDSPKK  360
GSIGDAAVSS PKMHGATAAS SSIAGQRNSF QSRDSHVKLR IKSFRVPELF IEIPESATVG  420
LLKRTVMDAV IAILGGGLRV GVLLQGKKVR DDNKTLMQTG IAHNNQLDAL GFSLEPNPSQ  480
TPHSLSPGSS SFLPSCDTPQ PLSRYPPDPS LVHQATCGGS PEPHSANLGN FIESDHDSAP  540
FPKDMLVDKS TSDSKALVPL SEMNMEALAV VPAHRKSKRS EIVQRRIRRP FSVTEVEALV  600
QAVEKLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR  660
VLTAHAYWSQ QQAKQQLKQQ QPETCLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-565726781107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314334KRKNYYKYQRSERLYPFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap28880.m000016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002534561.10.0telomere repeat-binding protein 5 isoform X1
TrEMBLB9T8J20.0B9T8J2_RICCO; Uncharacterized protein
STRINGXP_002534561.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-150TRF-like 2