PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

FAR1

Protein Properties

Length: 651aa MW: 75431.4 Da PI: 6.3836

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
28859.m000324	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.1	3.5e-24	71	162	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke +w+++++++ HnHel 28859.m000324 71 EYYSNFARKNGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgVTQWYISQFSNVHNHELL 162 69******************8888.**************************************998766789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.5E-22	71	162	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-13	290	347	IPR018289	MULE transposase domain
Pfam	PF04434	3.0E-8	525	559	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.497	525	560	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.0E-4	535	562	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence Send to blast
MAMKPSNNIW IRRQQCPCGD WKCYIKHEGD DQISVSSNIV KNETPSTSSS TEVVFTPYVG 60 QIFRSDDDAF EYYSNFARKN GFSIRKARST ESQNLGVYRR DFVCYRSGFN QPRKKANVEH 120 PRDRKSVRCG CDAKLYLTKE IVDGVTQWYI SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD 180 QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLTEK 240 RENDTFELLE ACKAMAERDA DFIYDYTMDE NGKVENIAWS YGDSVRAYTV YDESSHSLGW 300 ALQSFVRFMQ GRQPQTIITD IDSGLRDAIA RELPNTKHII CIWHILSKLS SWFSLALGSQ 360 FEDFKAEFDM LCHLETVEDF EQQWNLLVAR FGFASDKHMA LLFSYRGSWS ISYIRGYFVA 420 RTMSAEFSQS LDIFLKRILS GQTCLQVFFE QVSIAVNFEN QSRDGMQYMH IKTCMPIEEH 480 ARCILTPYAF NVFQNEIVLS MQYGVQEMSD GSYLVRHYKK MDGEYLVWIA ADEQIHCSCK 540 EFEHSGILCR HSLRVLAVKN YFQLPEKFYP LRWRREHSLV AMDDQNAQSN GNECAQAFHS 600 LASTLLTEAL ASKERFTYVH RELTGLLDHV RSMPVTEEFS VSMANNNISE S

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence Send to blast

MAMKPSNNIW IRRQQCPCGD WKCYIKHEGD DQISVSSNIV KNETPSTSSS TEVVFTPYVG  60
QIFRSDDDAF EYYSNFARKN GFSIRKARST ESQNLGVYRR DFVCYRSGFN QPRKKANVEH  120
PRDRKSVRCG CDAKLYLTKE IVDGVTQWYI SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD  180
QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLTEK  240
RENDTFELLE ACKAMAERDA DFIYDYTMDE NGKVENIAWS YGDSVRAYTV YDESSHSLGW  300
ALQSFVRFMQ GRQPQTIITD IDSGLRDAIA RELPNTKHII CIWHILSKLS SWFSLALGSQ  360
FEDFKAEFDM LCHLETVEDF EQQWNLLVAR FGFASDKHMA LLFSYRGSWS ISYIRGYFVA  420
RTMSAEFSQS LDIFLKRILS GQTCLQVFFE QVSIAVNFEN QSRDGMQYMH IKTCMPIEEH  480
ARCILTPYAF NVFQNEIVLS MQYGVQEMSD GSYLVRHYKK MDGEYLVWIA ADEQIHCSCK  540
EFEHSGILCR HSLRVLAVKN YFQLPEKFYP LRWRREHSLV AMDDQNAQSN GNECAQAFHS  600
LASTLLTEAL ASKERFTYVH RELTGLLDHV RSMPVTEEFS VSMANNNISE S

Cis-element ? help Back to Top
Source	Link
PlantRegMap	28859.m000324

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015581497.1	0.0	LOW QUALITY PROTEIN: putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	B9SW49	0.0	B9SW49_RICCO; Uncharacterized protein
STRING	XP_002530218.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	28859.m000324

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]