PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28752.m000323
Common NameRCOM_0327250
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 591aa    MW: 64930.1 Da    PI: 4.6753
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28752.m000323genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.2e-08120142427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                    ++C ff++ G+C  GdrC F Hgp
  28752.m000323 120 VPCIFFQK-GFCLKGDRCAFVHGP 142
                    69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8032554IPR000571Zinc finger, CCCH-type
SMARTSM003560.00182653IPR000571Zinc finger, CCCH-type
PfamPF156633.1E-112680No hitNo description
PROSITE profilePS5010310.3145682IPR000571Zinc finger, CCCH-type
SMARTSM003560.125881IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699116143IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-5116142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5117141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5118142IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-5120142IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MVAATQQQQQ QQATASALSA EEEALKRNTD CVYFLASPLT CKKGSECEYR HSEYARVNPR  60
DCYYWLNGSC LNPKCGFRHP PLDGLFGIQA ATSAGPSLPQ SQKVAAPAVH APQNPGKQAV  120
PCIFFQKGFC LKGDRCAFVH GPSPTSNKIS QPVGPSAGTE LPPQTKAYGG PQKLTQDQRT  180
PQANFSRAVE ASTEAKLASK SEIGSRRDVV GVERNLPPSK SMDVEVAKYK VTDLHPVVNG  240
NSSRFNRLHQ SQVPDDQNFQ NGKDVDELLR ESSPGFDVLV DDELRNSDFY HGEDQYGRTT  300
GPEGRNLNPV GSSSNGSDLR VEREIDKGRS RGRLSPGRSQ IPSHQGRLRD RIKGRVEEDY  360
DSEGRSIRGN RMRREMTDDR NTDFAAPKSL AELKGTKSIE GVMQQSLGKR KQLGDHQPSE  420
GDLSFEGPMP LSEILKRKRQ AGVAASGSAS SFNKHDDNQK ESKEGLPGSP NNAAVTEIEN  480
GPSFVKNEAN RQVLKDDDVP KSATAVENTE VDLGQCSQLP NQSEPETEDG MIVDDGVEEE  540
EYEVDDQGEG DYEYEQGDEG EYYEEGENAE GEEEYVDENE EFAKKLGVVF T
Cis-element ? help Back to Top
SourceLink
PlantRegMap28752.m000323
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581501.10.0zinc finger CCCH domain-containing protein 17
TrEMBLB9SW620.0B9SW62_RICCO; Uncharacterized protein
STRINGXP_002530231.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137