PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

28694.m000662

Common Name

LOC8280380, RCOM_0311620

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

C2H2

Protein Properties

Length: 552aa MW: 59963.9 Da PI: 8.918

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
28694.m000662	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H 28694.m000662 87 FVCEICNKGFQRDQNLQLHRRGH 109 89*******************88 PP
2	zf-C2H2	12.6	0.00042	164	186	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ 28694.m000662 164 WKCDKCSKRYAVQSDWKAHSKTC 186 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-5	86	109	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.71E-7	86	109	No hit	No description
PROSITE profile	PS50157	10.949	87	109	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	87	109	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	89	109	IPR007087	Zinc finger, C2H2
SMART	SM00355	99	129	159	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	9.6E-5	152	185	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.71E-7	159	184	No hit	No description
SMART	SM00355	140	164	184	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence Send to blast
MMKGLIFHQQ QQQEENMSNL TSASGEASVS SGNRNETNYP PQQYFAHPPP PQSQPPAKKK 60 RNLPGNPDPD AEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTN 120 KEVIRKKVYV CPETSCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCDKCS KRYAVQSDWK 180 AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESA RAITDAPNPL LIPSNQSAAA 240 ASSATQNPIS LHQVPQLMNS HQNLHAFSLK KEQQTFSTTT ALRPELPPWL ACPPGVLGSG 300 SGHGPGPPHH QQTPIEHHHL SSSILNFQQD LGSSNPNPSL GPTLPHYQAA PPPSPHMSAT 360 ALLQKAAQMG ATMSSKTTTA GLMMRPHQHQ HQHEQAHVTA DSTNNNANTT GFVLNLSSRD 420 QELAASGGGG SFVHSLQAAG ANGVLLQEMM NSLSSAASGF EGTATATATS FEDAFVSGVL 480 NNSKKDGNFL DGSLSKATTN GNNGGEDLTR DFLGLRAFSH SDILNMAAGL GNCVNTSHEQ 540 QQQNQSQKTW RG

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence Send to blast

MMKGLIFHQQ QQQEENMSNL TSASGEASVS SGNRNETNYP PQQYFAHPPP PQSQPPAKKK  60
RNLPGNPDPD AEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTN  120
KEVIRKKVYV CPETSCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCDKCS KRYAVQSDWK  180
AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESA RAITDAPNPL LIPSNQSAAA  240
ASSATQNPIS LHQVPQLMNS HQNLHAFSLK KEQQTFSTTT ALRPELPPWL ACPPGVLGSG  300
SGHGPGPPHH QQTPIEHHHL SSSILNFQQD LGSSNPNPSL GPTLPHYQAA PPPSPHMSAT  360
ALLQKAAQMG ATMSSKTTTA GLMMRPHQHQ HQHEQAHVTA DSTNNNANTT GFVLNLSSRD  420
QELAASGGGG SFVHSLQAAG ANGVLLQEMM NSLSSAASGF EGTATATATS FEDAFVSGVL  480
NNSKKDGNFL DGSLSKATTN GNNGGEDLTR DFLGLRAFSH SDILNMAAGL GNCVNTSHEQ  540
QQQNQSQKTW RG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-34	160	221	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-34	160	221	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	126	KLKQRTNKEVIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	28694.m000662

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002527396.1	0.0	protein indeterminate-domain 7
Refseq	XP_015579824.1	0.0	protein indeterminate-domain 7
Swissprot	Q9LRW7	1e-135	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	B9SN27	0.0	B9SN27_RICCO; Nucleic acid binding protein, putative
STRING	XP_002527396.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-133	indeterminate(ID)-domain 7

Link Out ? help Back to Top
Phytozome	28694.m000662
Entrez Gene	8280380

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]