PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 28617.m000214 | ||||||||
Common Name | RCOM_0291130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | B3 | ||||||||
Protein Properties | Length: 125aa MW: 14325.5 Da PI: 9.7666 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.5 | 1.6e-10 | 13 | 90 | 11 | 87 |
HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ++g l++p +++++ +k +++ l+++desg + ++++++ +++ +v++ W +Fv++++Lk+gD ++F+ +++ 28617.m000214 13 IERG-LSVPEACIKAFqPTDKGTEMNLQVRDESGIVRTFRCRIpiGLNPKPVVFG-DWLQFVRSKDLKQGDAITFYKEKD 90 4555.99******9999667788999********888888877666666668888.9*******************5533 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.9E-13 | 3 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.86E-10 | 3 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.89E-16 | 3 | 93 | No hit | No description |
SMART | SM01019 | 0.0037 | 4 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.2E-9 | 13 | 89 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MAMFSKVLQC PDIERGLSVP EACIKAFQPT DKGTEMNLQV RDESGIVRTF RCRIPIGLNP 60 KPVVFGDWLQ FVRSKDLKQG DAITFYKEKD HATGADYRIT VKKRESYYSR FKTSIHPRDI 120 TAQPV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 28617.m000214 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B9T462 | 8e-89 | B9T462_RICCO; Uncharacterized protein | ||||
STRING | XP_002533031.1 | 1e-89 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13561 | 5 | 27 |
Link Out ? help Back to Top | |
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Phytozome | 28617.m000214 |