PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

28609.m000209

Common Name

LOC8262354, RCOM_0285440

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bHLH

Protein Properties

Length: 327aa MW: 36193.1 Da PI: 6.9104

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
28609.m000209	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.4	6.9e-10	238	281	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq 28609.m000209 238 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 281 5679*****************5.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.3E-12	230	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.326	231	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-13	231	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.04E-11	233	285	No hit	No description
SMART	SM00353	9.9E-12	237	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.4E-7	239	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MALAKDRIGS VQTCAYNGNL MGDLSSLDPY TFDGKHKLVP EEGESNIKNL AMSHSYSSSL 60 GSPSSANSNE FLFHSARHQA HEGAHSLINF RGGYDGFLHG NGSLLSFEQN NKVSSQTSSG 120 LKEDYSTWEV DFNCNYQWNQ MNPKSSADPR LVENINCFHT ASNFNSIDNS EKEDPGDWLY 180 SEGTIITDHS IQEPGTQDAN FHKRPHMGES TQAVKKQCNS ATKKQKPKTS PSKDPQSIAA 240 KNRRERISER LKILQELVPN GSKVDLVTML EKAISYVKFL QLQVKVLATD EFWPVQGGKA 300 PDVSQVKEAI DAILSSQKDR NSSSSSK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	28609.m000209

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002532470.1	0.0	transcription factor bHLH83
Swissprot	Q9FJ00	1e-65	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	B9T2K1	0.0	B9T2K1_RICCO; DNA binding protein, putative
STRING	XP_002532470.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4937	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	1e-56	RHD SIX-LIKE 1

Link Out ? help Back to Top
Phytozome	28609.m000209
Entrez Gene	8262354

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]