PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28582.m000333
Common NameLOC8287219, RCOM_0279060
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 245aa    MW: 27002.3 Da    PI: 6.6036
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28582.m000333genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000453456123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y C+ C++ F+++ +L  H++ H
  28582.m000333 34 YICTRCSRGFPSSQSLGGHQNAH 56
                   89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.5E-63261No hitNo description
PfamPF139121.7E-73358IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.6353461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MQSKTNSCES SNTGSIRRAT SIGSLLTLNQ PDVYICTRCS RGFPSSQSLG GHQNAHRRER  60
NAERRVMQEE RKSILEKIKR TEMNILSSTR PWGASPPPKP TPTDHQYLKP HFAISLDKLG  120
HDHNGPLAGL KPFLDFQVQV GMGIIGLPPA SASMAAANSD HHEVPSHDEI DLEIEGDELP  180
YVAVPTGDDN NQNNPTTELM PWELIQFPDS DSSTGQVEEE AGSMKGKKKS NKVTIKKDLD  240
LNLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap28582.m000333
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002530368.10.0uncharacterized protein LOC8287219
TrEMBLB9SWJ90.0B9SWJ9_RICCO; Uncharacterized protein
STRINGXP_002530368.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1704455